Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g2033 ATGAGCTTCCAGGATATTGAAGCTGGCCGGCCGTTCGGTTCGAGACGCGGCGGACCGATCAACGGGAAGCAAGACCCAACGCAAGCGGTGGCTGCCGGAATTTTTCAGATCAACACCGCCGTTTCGACGTTTCAGAGACTTGTTAATACCCTTGGAACCCCCAAAGATACCCCTGAGCTTCGTGAAAAGCTTCACAAGACAAGACAACATATTGGGCAGTTGGTGAAGGATACATCAGCCAAGCTTAAACAAGCTAGTGACATTGATCACCATGCCGATGTTAATGCAAGCAAGAAAATAGCAGATGCTAAACTCGCCAAAGATTTTCAAGCAGTGTTGAAAGAGTTTCAGAAGGCACAACGTCTTTCAGCCGAGAGGGAAACAGCTTACACTCCTTTTGTTCCACAAGCAGTTCTTCCTTCGAGCTACACAGCTAGTGAAATGGATATTGGTACTGATAAGACACCAGAACAGCGTGCCCTTCTTGTGGAATCCAGAAGGCAGGAGGTTTTATTCTTAGATAATGAGATTGCATTCAATGAGGCAATCATTGAGGAAAGGGAGCAAGGCATTCAAGAAATACAGCAGCAAATTGGTGAAGTTAATGAAATTTTCAAAGATCTTGCTGTGCTTGTCCATGAACAAGGAACCATGATTGATGATATTGGTTCCAACATTGAGAACTCCCATGCAGCAACTGCACAAGCAAAGTCTCAACTTGCAAAAGCTTCAAAAACACAAAGATCAAATTCATCTTTGGCATGCTTGCTTTTGGTCATATTTGGGATTGTGCTTCTCATCTTGATCATAGTTCTTGCTGCTTAG 825 0.4412 MSFQDIEAGRPFGSRRGGPINGKQDPTQAVAAGIFQINTAVSTFQRLVNTLGTPKDTPELREKLHKTRQHIGQLVKDTSAKLKQASDIDHHADVNASKKIADAKLAKDFQAVLKEFQKAQRLSAERETAYTPFVPQAVLPSSYTASEMDIGTDKTPEQRALLVESRRQEVLFLDNEIAFNEAIIEEREQGIQEIQQQIGEVNEIFKDLAVLVHEQGTMIDDIGSNIENSHAATAQAKSQLAKASKTQRSNSSLACLLLVIFGIVLLILIIVLAA* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g2033 274 SMART tSNARE_6 176 243 IPR000727 -
Mtr8g2033 274 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 181 243 IPR000727 -
Mtr8g2033 274 PANTHER SYNTAXIN OF PLANTS PROTEIN 2 273 - -
Mtr8g2033 274 Pfam SNARE domain 217 269 IPR000727 -
Mtr8g2033 274 CDD SNARE_Qa 201 242 - -
Mtr8g2033 274 Gene3D - 175 274 - -
Mtr8g2033 274 PANTHER SYNTAXIN 2 273 IPR045242 -
Mtr8g2033 274 CDD SynN 24 149 IPR006011 GO:0016020
Mtr8g2033 274 Pfam Syntaxin-like protein 31 130 IPR006011 GO:0016020
Mtr8g2033 274 ProSitePatterns Syntaxin / epimorphin family signature. 187 226 IPR006012 GO:0005484|GO:0006886|GO:0016020
Mtr8g2033 274 Gene3D - 21 134 - -
Mtr8g2033 274 MobiDBLite consensus disorder prediction 1 26 - -
Mtr8g2033 274 SUPERFAMILY t-snare proteins 24 236 IPR010989 GO:0016020|GO:0016192
Mtr8g2033 274 SMART SynN_4 15 128 IPR006011 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g2033 Mtr-Chr8 30168387 30173598 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g2033 1 262 SNARE and Associated Proteins AT5G46860 77.099 7.66e-146 407
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g2033 - K08488 gsj:114391232 418.698
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g1219 5 12506428 12510416 Mtr8g2033 8 30168387 30173598 PCT