Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g2010 ATGAGTGAAAGTGAAAATTTTGAGGTAGATAGAAAAGAGGGTACTTTAGATTGGAGGTTTGTTAGTGGCAACCTTGCAAATTCATCTGTAGGTTTGGTTTCCATGGAAAATTCTATGATGGGTACTTCTTCATGTCCTAATTCAATGGTGGATTCATATGGTCCTAACTTCTTGGACCTTCTTACTAACTCTGAAAACTTGGGTGGTTTTTGTGATGTTAATGGTCAGAGTAATGAGGTGAGAAAAGATGGGTTTGGTTTTGCAAGAGTTGGTTGTGATGATAGAACAGTTGGAATGGGTTGGGACCTTGGTAGTAGTTCTATGATAAAGAGGGATGGTGTTTTACCAAATGGGGCTGAGATATTTCCTCAAAGTTTGTCTCAGTTTTCAACTGATTCTGGATTTGTTGATGCTGCAAGGATGTCTTGTTTTAGTGCCGGGAGTTTCGTAGATATGATGAACTCATGTGGGATTCCTCAATCTATGGCTCTACCTCTACACGTGTCTCGGTCTGTTGAGCATCTTGGTAGTGATGGAAGTCCAATCCAGAATGATCGAAGAAGTGACTGTCCTGTGATGTCTCAAGATGAAGGGAAACAAGTTCTTGGTAGGTCTTGTAATGAAGCTGATGGAGATGAATCAAGTGGTGATGATGGTTCCCAAATGTTGGATTGTGCAAGTGGAGAACCTTCTATTAAAGGTCTAAATCCAAAGAAAAGGAAAAGAAATGGACAGGACGGTGATAGTGATAAAGCCACCGGAACTCTTGAGTTACCAAGTGAAACCGCAAAGGACAACTGTGAGAGCAGAAAAAAGGGAAAGCAGCAAACAAGTTCAACAGCCAAGGCTTCTGGGAAGAATGCCAAACAGGGGTCTCAAGCTTCTGATCCGCCTAATGAGGGATACGTACATGTTAGGGCTCGCCGTGGTCAAGCAACAAATAGCCATAGCCTTGCAGAGAGAGTGAGGAGAGAAAAGATCAGTGAAAGAATGAAGTTTCTTCAAGATCTTGTACCTGGATGCAACAAGGTCACTGGCAAGGCAGTGATGCTAGATGAAATCATTAATTATGTACAGTCTCTTCAGCAACAAGTTGAGTTTTTATCAATGAAACTTGCAACAGTAAATCCACATGTGGATTTTAATATGGAACGGCTGCTTCCTAAAGATATTCTTCAACATCAACCGGGTCCATCATCTGCTCTGGGGTTTCTCAGAGAAATGCCAATGGCTTTTCCTCCATTATCACATTCATATCAACCAGGACTGATTCATTCAACTCTACCTAACATGGCAAATTTATCAGATATGCTTAGGCAGACTGTTCAACCACAGTTGGAACCTTTGGCTGGAGGGTTTAAAGAGCCAAATCAGGTTAATCCATTGCAAGCAACCAAGGACTGA 1404 0.4167 MSESENFEVDRKEGTLDWRFVSGNLANSSVGLVSMENSMMGTSSCPNSMVDSYGPNFLDLLTNSENLGGFCDVNGQSNEVRKDGFGFARVGCDDRTVGMGWDLGSSSMIKRDGVLPNGAEIFPQSLSQFSTDSGFVDAARMSCFSAGSFVDMMNSCGIPQSMALPLHVSRSVEHLGSDGSPIQNDRRSDCPVMSQDEGKQVLGRSCNEADGDESSGDDGSQMLDCASGEPSIKGLNPKKRKRNGQDGDSDKATGTLELPSETAKDNCESRKKGKQQTSSTAKASGKNAKQGSQASDPPNEGYVHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCNKVTGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPHVDFNMERLLPKDILQHQPGPSSALGFLREMPMAFPPLSHSYQPGLIHSTLPNMANLSDMLRQTVQPQLEPLAGGFKEPNQVNPLQATKD* 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g2010 467 SMART finulus 317 367 IPR011598 GO:0046983
Mtr8g2010 467 CDD bHLH_AtBPE_like 301 386 - -
Mtr8g2010 467 MobiDBLite consensus disorder prediction 234 248 - -
Mtr8g2010 467 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 311 361 IPR011598 GO:0046983
Mtr8g2010 467 PANTHER BHLH TRANSCRIPTION FACTOR 32 168 - -
Mtr8g2010 467 PANTHER BHLH TRANSCRIPTION FACTOR 174 461 - -
Mtr8g2010 467 Pfam Helix-loop-helix DNA-binding domain 314 362 IPR011598 GO:0046983
Mtr8g2010 467 MobiDBLite consensus disorder prediction 173 301 - -
Mtr8g2010 467 Gene3D - 308 380 IPR036638 GO:0046983
Mtr8g2010 467 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 309 380 IPR036638 GO:0046983
Mtr8g2010 467 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 32 168 IPR024097 GO:0006355
Mtr8g2010 467 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 174 461 IPR024097 GO:0006355
Mtr8g2010 467 MobiDBLite consensus disorder prediction 448 467 - -
Mtr8g2010 467 MobiDBLite consensus disorder prediction 273 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g2010 Mtr-Chr8 29907733 29911908 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g2010 17 454 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68920 42.826 2.18e-96 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mtr8g2010 HLH 4.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g2010 - - mtr:MTR_8g065740 931.398
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g2010 8 29907733 29911908 Mtr8g2010 8 29907733 29911908 ECH