Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g1992 ATGGGTGTTGTTGAATTTCTTAGACCCTTTGTTGAGACCAAAGCTTGGGATTATGTTGTTGTTTGGAAATATGGAAATGATCCAACTAGGTTTATTGAGTGGTTAGGTTGTTGCTGCTGTGGTGGAAACATTGAGAAAGTGAAGTTGAAAGAGGAAATTTGTGAAGAAAATAATTTGGCTTCCATTTGTAGGGATACCCTTTTTCATCATCGAGTTAAAACCAAGACTTGTGAAGCTCTTGCCAAGCTTCCTTTTACAATGTCTCTTTATTCTAGTGTCCATGCAGAGGTAGCAATATCACAACAACCAAGATGGCTTATCCATGAGGACTCAGTTGGAACTCAAGTTTTAATCCCTATTATTGGCGGTCTTGTTGAGCTTTTCACTGCAAAGCATATTCCCGAAGATATAAATATCATGAAGTTCATATCAGCACACTGTTGTGTCTCTATAAAGCAAGAAGCCATATCGGCACATAGCTATGCCAACACGAACTTCAATTTTAGCATGGAAGGACACTTTGGTGAATCTAATCCTTCAACTGAGCACTTAACATTTGATTCAAACTATGGTTGCTTGATTCCTCTTGAATATTTGAATCAACCACTTAAAAGTCACAAACACAATAAAATTCCAGTGAAACGTTGTAGTTCGAGTGTCGATTGTGGAAATGGCGAAGAAAATAAAGAAAATATTGTTAAGGAGCCTCGAGAGAAAGTGTATCATGCTAAAAATCTTATCACTGAGAGGAATAGGAGGAACAGAATAAAACAAGGGCTTTTTACTCTAAGGTCTCTAGTCCCGAATATAACCAAGATGGACAGAGTAGCAATTCTTGAGGATGCGATTGAATATATAATGGAATTGCAGAGGCAAGAGACGGAACTTCAAGAAGAGGTCAAGGCTTTAGAAGTTGAGGACTGTGAGAAAGACAAAGAACTTGCAGAAGGAACCAGAAACCTACCTCTCATTGATCTTAATCAATGTTCGTCTGATTCCACTAGAAAGACACAGATGGAGTTGCAAGTAGAAGTGAATCATATCGCCGGAAAAGATTTCATGATTAAGTTGTGCTGTGAGCAGAAGCAAGGTGTGTTTTCAAGGTTGATGAAAGCAATAGATTCATATGGACTGCATGTGTTAAGTGCAAACATGACCACATTTGATGGCAAAGTTCTGAACATTCTTATGGTTGAGGCAACTGCGCAGGATATTCATCCGAAGAAACTTAGAGAGTATTTGATGCACCAAACAAGGTAA 1260 0.3841 MGVVEFLRPFVETKAWDYVVVWKYGNDPTRFIEWLGCCCCGGNIEKVKLKEEICEENNLASICRDTLFHHRVKTKTCEALAKLPFTMSLYSSVHAEVAISQQPRWLIHEDSVGTQVLIPIIGGLVELFTAKHIPEDINIMKFISAHCCVSIKQEAISAHSYANTNFNFSMEGHFGESNPSTEHLTFDSNYGCLIPLEYLNQPLKSHKHNKIPVKRCSSSVDCGNGEENKENIVKEPREKVYHAKNLITERNRRNRIKQGLFTLRSLVPNITKMDRVAILEDAIEYIMELQRQETELQEEVKALEVEDCEKDKELAEGTRNLPLIDLNQCSSDSTRKTQMELQVEVNHIAGKDFMIKLCCEQKQGVFSRLMKAIDSYGLHVLSANMTTFDGKVLNILMVEATAQDIHPKKLREYLMHQTR* 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g1992 419 SUPERFAMILY ACT-like 352 414 IPR045865 -
Mtr8g1992 419 Pfam Helix-loop-helix DNA-binding domain 247 290 IPR011598 GO:0046983
Mtr8g1992 419 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 240 289 IPR011598 GO:0046983
Mtr8g1992 419 SMART finulus 246 295 IPR011598 GO:0046983
Mtr8g1992 419 Coils Coil 279 306 - -
Mtr8g1992 419 PANTHER TRANSCRIPTION FACTOR BHLH90 58 418 - -
Mtr8g1992 419 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 58 418 - -
Mtr8g1992 419 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 6 144 IPR025610 -
Mtr8g1992 419 CDD ACT_UUR-ACR-like 354 416 - -
Mtr8g1992 419 Gene3D - 230 307 IPR036638 GO:0046983
Mtr8g1992 419 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 241 304 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g1992 Mtr-Chr8 29726031 29729158 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g1992 3 419 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G16910 32.087 4.44e-69 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mtr8g1992 bHLH-MYC_N 4.8e-15 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g1992 - - mtr:MTR_8g064700 850.121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g1992 8 29726031 29729158 Mtr8g1992 8 29726031 29729158 ECH