Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g1970 ATGTCACTCTCCACCACAACTTCTCACCTCACCATTCTTCCTTCACTTCCTTCAACTTCACCACTTTCTCTCAGATTTTCCTTCACTTTCCAACCAAAAACTAACCAAAAAACTTGTCTCAAAACTCTCTTGTCTTCTTCAACAAGGCATGCTAGATTCTTGGTGAAGTCTCAATCTACTACTGCTTCATCTGAGGCTGTGAAAGTGACACAAGTTCCTTCTGAAATGAAGGCTTGGGTGTATGGAGAATATGGAGGTGTTGATGTTTTGAAATTTGACTCCAATGTTGCTGTACCTGATGTTAAGGAAGATCAGGTTCTTGTTAAAGTTGTTGCAGCTGCTCTTAACCCTGTTGATGGTAAAAGAAGGCAGGGAAAGTTTAAGGCTACAGATTCTCCGCTTCCGACTGTTCCTGGCTATGATGTTGCTGGGGTTGTAGTGAAGGTTGGCAGTGAAGTAAAGGACTTCAAAGTTGGTGATGAAGTGTATGGTGATGTAAATGAGAAAGCATTAGAAGGGCCTAACCAATTTGGGTCTTTGGCTGAGTACACAGCGGTCGAGGAGAAATTGTTGGCACTAAAACCTACAAATTTGGACTTTGCTCAAGCTGCTTCTCTACCTCTTGCTATTGAGACTGCTTATGAAGGTTTGGAGAGGACTGGATTTTCTTCTGGTAAATCTATTCTTGTTCTCAATGGTTCTGGTGGAGTTGGAAGCCTAGTGATTCAGCTAGCTAAACAAGTTTTTGGAGCTTCAAGAGTTGCTGCTACTTCAAGCACTAGACATTTGGAGCTACTGAAAAGTCTTGGAGCTGATTTGGCTATTGACTACACAAAGGAGAACTTTGAAGACTTGCCAGAAAAATTTGATGTAGTTTATGATGCCATTGGGCAATGTGACAGAGCAGTGAAGGCAATAAAAGAAGGTGGCAGTGTAGTAGCACTAACGGGAGCTGTTACACCACCTGGATTCAGATTTGTAGTGACTTCCAATGGAGCTGTTTTGAAGAAACTAAACCCTTATTTAGAGAGTGGAAAGGTGAAGCCAATTATTGATCCCAAAGGTCCATTCCCTTTTGATCAGGTTGCTGAAGCTTTCTCTTACATTGAAACAAACAAAGCTACTGGAAAGGTTGTTGTATTCCCCATCCCATGA 1155 0.4182 MSLSTTTSHLTILPSLPSTSPLSLRFSFTFQPKTNQKTCLKTLLSSSTRHARFLVKSQSTTASSEAVKVTQVPSEMKAWVYGEYGGVDVLKFDSNVAVPDVKEDQVLVKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGSEVKDFKVGDEVYGDVNEKALEGPNQFGSLAEYTAVEEKLLALKPTNLDFAQAASLPLAIETAYEGLERTGFSSGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRHLELLKSLGADLAIDYTKENFEDLPEKFDVVYDAIGQCDRAVKAIKEGGSVVALTGAVTPPGFRFVVTSNGAVLKKLNPYLESGKVKPIIDPKGPFPFDQVAEAFSYIETNKATGKVVVFPIP* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g1970 384 PANTHER NADPH-DEPENDENT ALKENAL/ONE OXIDOREDUCTASE, CHLOROPLASTIC 38 384 IPR044626 GO:0016628
Mtr8g1970 384 SUPERFAMILY GroES-like 73 230 IPR011032 -
Mtr8g1970 384 Gene3D - 83 380 - -
Mtr8g1970 384 Pfam Alcohol dehydrogenase GroES-like domain 104 166 IPR013154 -
Mtr8g1970 384 ProSitePatterns Quinone oxidoreductase / zeta-crystallin signature. 225 246 IPR002364 GO:0008270|GO:0016491
Mtr8g1970 384 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 198 321 IPR036291 -
Mtr8g1970 384 Pfam Zinc-binding dehydrogenase 269 380 - -
Mtr8g1970 384 CDD MDR_like_2 76 380 - -
Mtr8g1970 384 SMART PKS_ER_names_mod 85 380 IPR020843 GO:0016491
Mtr8g1970 384 Gene3D - 217 331 - -
Mtr8g1970 384 PANTHER NADPH-DEPENDENT ALKENAL/ONE OXIDOREDUCTASE, CHLOROPLASTIC 38 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g1970 Mtr-Chr8 29616228 29618918 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g1970 103 272 Monolignol Biosynthesis Gene Families AT4G37980 26.531 1.78e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g1970 K18980 - gmx:100810816 578.556
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g1970 8 29616228 29618918 Mtr8g1970 8 29616228 29618918 ECH