Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g1962 ATGGGACCTGTGGAAAGGAGATGGATACTTCATAATCAAGAACTTTGCAGCTGCAGTTTGGAAAGAGCATATCTATCCCTGTCTTTACCGAAGCTCGAATTGAAGGAGAAGAAAGAACTAAGTAAGGCGACTGATAATTTTAGTCCTGCCAATAAAATTGGAGAGGGTGGTTTTAGTTCTGTTTACATGGGACGACTGAAAAATGGAAAACTTGCTGCTATAAAAGTTCTTTCAGCTGAATCAAGACAAGGGGCGAAAGAGTTCTTGACGGAGATTAGTGTGATCTCTGAAGTAGAGCATGAAAATTTGATGATCTTTTCCTCTTCTCTTCAGTTGGAGGTCACAGTAGTATCTACTTTGATTGGCGAACACGATGTAAAATATGTGTTGACATTGCACGCGGGCTTGCCTTTCTGCACGAAGAAGTCAGGCCTCCCATCATTCATAGGGATACAAAAGCAAGCAATATTCTCCTTGACAAAGATCTTACACCGAAGATTTCGGATTTTGGTCTTTCAAGCGGATATATTTTTAGCACCTCAGTTACATGTTGCATCTAAGAGATTCAACATTCACATGCTTCAGAGAGCATGGAAGGCTTTGAATTGGACTCAGAAGTTGAGTTTATTGACGATAGTTATCCGTGGAATAACATCTTCATCAGAGATTTCTACAAATAAGCTTGAGAAAGCAAGTTCAGATGATGCTACACTTCAGCCTTATGAGCAGCTCAGTTTTTCATATCCATCCTTATTGCCACCTCTTATACATGAACGGGATACTTATCTTGCATGGTCTCTGAAGCGGAGCAAGGCTGTGAATAACTGTAAAAGGGTGGTAGGTGTGATTGGAAAAGGCCACATGGATGGTGTAATATATGCACTGTTAGCCGATACAGGGAATTTGAGATTTCGAGACCTTGCTGGGAAAAATTCAAATGATGGGGGTTCTAATGGCTGGATTGATGTCATTAATTTAATGGTTCTTTATAGCTTAGGCAATTTGAGTCTCTATCCAATTTTCTATACCACTAATTGA 1038 0.3998 MGPVERRWILHNQELCSCSLERAYLSLSLPKLELKEKKELSKATDNFSPANKIGEGGFSSVYMGRLKNGKLAAIKVLSAESRQGAKEFLTEISVISEVEHENLMIFSSSLQLEVTVVSTLIGEHDVKYVLTLHAGLPFCTKKSGLPSFIGIQKQAIFSLTKILHRRFRILVFQADIFLAPQLHVASKRFNIHMLQRAWKALNWTQKLSLLTIVIRGITSSSEISTNKLEKASSDDATLQPYEQLSFSYPSLLPPLIHERDTYLAWSLKRSKAVNNCKRVVGVIGKGHMDGVIYALLADTGNLRFRDLAGKNSNDGGSNGWIDVINLMVLYSLGNLSLYPIFYTTN* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g1962 345 CDD TraB_PrgY-like 242 295 IPR046345 -
Mtr8g1962 345 Gene3D Phosphorylase Kinase; domain 1 21 110 - -
Mtr8g1962 345 Pfam Protein kinase domain 50 111 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr8g1962 345 SUPERFAMILY Protein kinase-like (PK-like) 30 104 IPR011009 -
Mtr8g1962 345 ProSitePatterns Protein kinases ATP-binding region signature. 53 75 IPR017441 GO:0005524
Mtr8g1962 345 PANTHER TRAB DOMAIN-CONTAINING PROTEIN 193 322 - -
Mtr8g1962 345 ProSiteProfiles Protein kinase domain profile. 47 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr8g1962 345 PANTHER PHEROMONE SHUTDOWN PROTEIN 193 322 IPR046345 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g1962 Mtr-Chr8 29506811 29510099 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g1962 38 104 Receptor kinase-like Gene Family AT1G29740 58.209 2.41e-18 84.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Mtr8g1962 Pkinase 7.5e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g1962 - - mtr:MTR_4g088945 335.109