Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g1949 ATGGATGAAGTGAGTAGTGAGTGGAGCAGCGAGCAGAATAAATTGTTTGAATATGCATTGGCCAATTATCCTGACGATGTTGTGGATCGATGGGAGAAGATTGCGGCCGGTGTGCCTGGGAAAACTTTGGAACAAATTAAACATCACTATGAGGTTTTGGTAGATGATATTCACAACATTGAATCTGGTTTTGTGCCTCTACCAGATTATGATTCTTTTTCAAACTCAACAAAGTGTACTATTGTTAAAAAGGGAACTAAGGCTTCCGGTTCTTATCATTGGACAGAAGATGAACACAGGTTATTTCTTATGGGTGTGGAGAAGTATGGAAAGGGTAAATGGAAAAAAATCTCAGAGAATTATGTGGTGACAAAAACACATACACAAATAGCAAGTCATGCTCAAAAATACTTCAAAGGTCTGAATTCAACGAAAGAGAAGAAAGAAAGAAGGCGATCCAGCAGACATGATGTCACATATGTCGAAAATGGAGACATTTCAGCACCTCATGGAGCAATTACCGGTCAAGCAAGTGATTATGCAAGACAATCAGCCACACAAACTCCTCAAGCTCCATCTGCTGGTACCAGAACTTTAAATGATCCACCAGTTCCACCTGCCGGAATGTATGTTGTGACCCCGCCTTCTGGAGTCGGAGTTTATGCTGCTCATAGGATCGGGCAACCTATAGGAGGACGGAATTGCACTCCCGGACAGATGGCTTATGGTATTGGACCAGTTTCTTGGACAAGTATGCCAGGGGTACCAATGAACTTGGGTCCTATGACATTTCCCATGCAAAATACATATGCTCACTTATGA 822 0.4209 MDEVSSEWSSEQNKLFEYALANYPDDVVDRWEKIAAGVPGKTLEQIKHHYEVLVDDIHNIESGFVPLPDYDSFSNSTKCTIVKKGTKASGSYHWTEDEHRLFLMGVEKYGKGKWKKISENYVVTKTHTQIASHAQKYFKGLNSTKEKKERRRSSRHDVTYVENGDISAPHGAITGQASDYARQSATQTPQAPSAGTRTLNDPPVPPAGMYVVTPPSGVGVYAAHRIGQPIGGRNCTPGQMAYGIGPVSWTSMPGVPMNLGPMTFPMQNTYAHL* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g1949 273 CDD SANT 7 54 IPR001005 -
Mtr8g1949 273 MobiDBLite consensus disorder prediction 178 205 - -
Mtr8g1949 273 ProSiteProfiles Myb-like domain profile. 1 54 IPR001005 -
Mtr8g1949 273 CDD SANT 94 138 IPR001005 -
Mtr8g1949 273 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 92 139 IPR006447 GO:0003677
Mtr8g1949 273 SUPERFAMILY Homeodomain-like 89 142 IPR009057 -
Mtr8g1949 273 Gene3D - 93 140 - -
Mtr8g1949 273 Gene3D - 2 67 - -
Mtr8g1949 273 PANTHER TRANSCRIPTION FACTOR SRM1 6 268 - -
Mtr8g1949 273 SMART sant 4 56 IPR001005 -
Mtr8g1949 273 SMART sant 90 140 IPR001005 -
Mtr8g1949 273 PANTHER TRANSCRIPTION FACTOR KUA1 6 268 - -
Mtr8g1949 273 ProSiteProfiles Myb-like domain profile. 94 138 IPR001005 -
Mtr8g1949 273 MobiDBLite consensus disorder prediction 178 197 - -
Mtr8g1949 273 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 94 142 IPR017930 -
Mtr8g1949 273 Pfam Myb-like DNA-binding domain 6 51 IPR001005 -
Mtr8g1949 273 Pfam Myb-like DNA-binding domain 94 138 IPR001005 -
Mtr8g1949 273 ProSiteProfiles SANT domain profile. 89 142 IPR017884 -
Mtr8g1949 273 SUPERFAMILY Homeodomain-like 6 62 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g1949 Mtr-Chr8 29261535 29262852 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mtr8g1949 Myb_DNA-binding 1.2e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g1949 - - mtr:MTR_8g063870 561.607