Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g1941 ATGAACCATTTAGTTATTTTCATCATAGTGATTCTAGCTATTGTGTTTTTCATTTCTGGTATCCTTCAACTGTTTGTTAGATTTCTCATAAGAAAAAGATCTTCTTTATCAAATTCTCAATCCAATAATAACTACCCTCAAATGTCTGAACCTGATCCTTATCAAAGACAATTGCAACAACTCTTCAATCTTCATGATTCAGGTTTAGATCAAGCTTTCATTGATGCTTTACCAGTTTTCCTTTACAAAGAGATAATAGGTTTGAAGGAACCATTTGATTGTGCTGTTTGTCTTTGTCAATTCACAGAACAAGACATGTTGAGATTGTTGCCTCTTTGTAATCATGCTTTTCATATTGATTGTATCGACACGTGGCTTCTTTCGAATTCAACTTGTCCTCTTTGTAGAGGGAGTCTTTATGAACATGGATTTGCCTTTGAAAATCCTGTGTATGATTTTGAGAGTTTAAGGGAAGAAGATAGGGTTTTTGATAGTGTTGTTTGTGATGCTGCTTCTGTTAACAAGCATGCAGAAAATCATATAATGAGTGGGAAAAGGGTTTTTTCTGTTAGGCTTGGGAAATTTAGAAGCTCAAATAATGGAGAGGGGGGTGTGGAAAGAAATGAAGGAGAATGTAGTAGTACAACTAAAAGTATTGTTGATGATGTAAGGAGATGCTATTCAATGGGTTCTTACCAATATGTTGTTGCTGATTCAGATTTGGTAGTGGCTTTGTGCCCTAATAAAGGTGAGGGAGGAGGAAATAGTGCTAGTATGAGACAATTGAAGGGAGGGTTTGGTCAAAATGGGAATTGTTCCATTGTTGGTGGAGATGTTGAGGGGAAAAAAATGAATGTTGCTAGGAAAGGTGAAAGTTTTTCTATATCAAAGATTTGGCTTTGGTCTAGGAAGGATAAGGTATCAAGTTCATCACACTCTCATATGGTTAATTCTAATCTCACTTCAACTTTGCCATGGATGAATAGAGAGATGAAGGAAGCAACTTAG 1008 0.3591 MNHLVIFIIVILAIVFFISGILQLFVRFLIRKRSSLSNSQSNNNYPQMSEPDPYQRQLQQLFNLHDSGLDQAFIDALPVFLYKEIIGLKEPFDCAVCLCQFTEQDMLRLLPLCNHAFHIDCIDTWLLSNSTCPLCRGSLYEHGFAFENPVYDFESLREEDRVFDSVVCDAASVNKHAENHIMSGKRVFSVRLGKFRSSNNGEGGVERNEGECSSTTKSIVDDVRRCYSMGSYQYVVADSDLVVALCPNKGEGGGNSASMRQLKGGFGQNGNCSIVGGDVEGKKMNVARKGESFSISKIWLWSRKDKVSSSSHSHMVNSNLTSTLPWMNREMKEAT* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g1941 335 SMART ring_2 94 135 IPR001841 -
Mtr8g1941 335 SUPERFAMILY RING/U-box 73 142 - -
Mtr8g1941 335 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 5 326 - -
Mtr8g1941 335 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 143 IPR013083 -
Mtr8g1941 335 Pfam Ring finger domain 93 136 IPR001841 -
Mtr8g1941 335 ProSiteProfiles Zinc finger RING-type profile. 94 136 IPR001841 -
Mtr8g1941 335 CDD RING-H2_PA-TM-RING 93 136 - -
Mtr8g1941 335 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 5 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g1941 Mtr-Chr8 29154294 29155939 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g1941 20 311 C3H Transcription Factor Family AT2G18650 38.365 3.67e-56 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g1941 - - gmx:100818135 449.514
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g1426 5 15014318 15016285 Mtr8g1941 8 29154294 29155939 PCT