Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g1930 ATGGATGAAGTGGGTAGCAGCTGTGAGTGGAGCAGAGATCAAGACAAAGCATTTGAAAATACATTGGCGAATTATCCCGAGGACGCTGTGGATCGATGGGAGAAAATTGCGGCTGATGTGCCCGGGAAAACTTTAGAAGAGATTAAACGTCACTATGTGGTTTTGTTTGATGATATCAACCACATTGAATCTGGTTTTGTGCCTCTGCCAGATTATGATTCTTTTTCAAAGAGCTCAACAACGTGTGCTGGTGAAGGAGGAGCTGTGAAAAAGGGAACTAAGGCTTCGAGTTCTTATCAAGAACGGCGAAAGGGTGTTCCTTGGACGGAAGATGAACATAGGCTATTTCTTCAAGGCCTGGAGAACCATGGATGGGGTGACTGGCGAAGTATATCAAGGTACAGTGTGGTGACAAGAACACCTACACAAGTAGCAAGCCATGCTCAGAAATACAAAATTCGTCAGGATTCAATGAAAGAGAAGAAAGAAAGAAGGCGATCCAGCATACATGATGTCACCTTTGTCAAAAATGGAGACATTTCAGCACCTCAAGGACCAATTACCGGTCAAGCAAGCAATTCTGCTGCAAATTCTGCTGGACAATCAGCCGAACAAGCTCCTCCAGTCCCACCTGCTGGAATCAAAACTCTTGATAATCCTCCATCCCCACCTGCTGGAATACACGCTGCTCCTAGGATCGGGCAACCTATAGGAGGACCAGTTGTATCTGCAGTTGGTACTACAGTGAATTTGACTGCTCCCGGAGACATGGATTATGGTCTTGGACCAGTTTCTGAGACAGTTATGCCAGGGGTACCAATGAACCTGGGTCCTATGACATATGCCATGCTACATACATATGCTCAATCATGA 873 0.4559 MDEVGSSCEWSRDQDKAFENTLANYPEDAVDRWEKIAADVPGKTLEEIKRHYVVLFDDINHIESGFVPLPDYDSFSKSSTTCAGEGGAVKKGTKASSSYQERRKGVPWTEDEHRLFLQGLENHGWGDWRSISRYSVVTRTPTQVASHAQKYKIRQDSMKEKKERRRSSIHDVTFVKNGDISAPQGPITGQASNSAANSAGQSAEQAPPVPPAGIKTLDNPPSPPAGIHAAPRIGQPIGGPVVSAVGTTVNLTAPGDMDYGLGPVSETVMPGVPMNLGPMTYAMLHTYAQS* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g1930 290 PANTHER TRANSCRIPTION FACTOR KUA1 8 286 - -
Mtr8g1930 290 PANTHER TRANSCRIPTION FACTOR SRM1 8 286 - -
Mtr8g1930 290 Pfam Myb-like DNA-binding domain 107 152 IPR001005 -
Mtr8g1930 290 MobiDBLite consensus disorder prediction 144 229 - -
Mtr8g1930 290 CDD SANT 9 52 IPR001005 -
Mtr8g1930 290 SUPERFAMILY Homeodomain-like 9 64 IPR009057 -
Mtr8g1930 290 CDD SANT 107 152 IPR001005 -
Mtr8g1930 290 SUPERFAMILY Homeodomain-like 100 157 IPR009057 -
Mtr8g1930 290 ProSiteProfiles SANT domain profile. 108 156 IPR017884 -
Mtr8g1930 290 MobiDBLite consensus disorder prediction 183 204 - -
Mtr8g1930 290 Gene3D - 8 54 - -
Mtr8g1930 290 Gene3D - 106 158 - -
Mtr8g1930 290 ProSiteProfiles Myb-like domain profile. 10 56 IPR001005 -
Mtr8g1930 290 MobiDBLite consensus disorder prediction 152 172 - -
Mtr8g1930 290 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 100 156 IPR017930 -
Mtr8g1930 290 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 104 155 IPR006447 GO:0003677
Mtr8g1930 290 ProSiteProfiles Myb-like domain profile. 100 152 IPR001005 -
Mtr8g1930 290 SMART sant 104 154 IPR001005 -
Mtr8g1930 290 SMART sant 6 58 IPR001005 -
Mtr8g1930 290 MobiDBLite consensus disorder prediction 83 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g1930 Mtr-Chr8 29038513 29042980 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mtr8g1930 Myb_DNA-binding 2e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g1930 - - gmx:100819797 359.377