Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g1922 ATGGAAGCTAAGAGTGGTCTTTTTGCAGGGTCTCTTAACAGCAATGAACTTGTGGTCATCCAAAAACAAAATGAGCCTAAGGCAGTGAAAAACTTGGATGGTCAAGATTGTGAGATATGTGGTGATTCTGTAGGGCGTACAGTAGAAGGAGACTTATTTGTAGCTTGTGAAGAGTGTGGCTTCCCTGTTTGCAGGCCATGCTATGAGTATGAAAGGAAAGAAGGGTCTCAAAATTGCCCTCAATGCCATACAAGATACAAGCGTATCAAAGGAAGTCCAAGAGTGGAGGGAGATGAAGATGAAGAAGATGTGGATGATATTGAACAAGAATTTAAAATGGAAGAGGAAAAGTACAAGCTTATGCATCAAGATAATATGAATAGCATTGATGATGATGATACAAAATATAGGGAGCAACCCCTATATTCTCACAGTATTGGAGAAAATTCAGATGGTGCAAAATTAGATAACAAGGAGAAAACAGATGAGTGGAAGCAGCAAGGAAATCTGTTGATTGAAACTGACGCGGTTGATCCAGAAAAGGCCATGAAAGATGAAACTAGACAGCCACTATCAAGGAAAGTAGCAATACCTTCAGGAAGACTCAGTCCTTATAGAATGATGGTTGTGGCTAGGCTCATCCTTCTATTACTCTTCTTTGAGTACAGAATCTCCCATCCAGTACCTGATGCAATTGGACTTTGGTTTATATCGGTATCATGTGAAATCTGGCTTGCATTGTCATGGATAGTTGATCAGATTCCCAAATGGTTTCCCATCGATCGCGAGACATACCTTGACCGCCTTTCAGTCAGGTTTGAGCCGGAAAACAAGCCCAACATGCTTTCTCCAATAGATATTTTTATAACAACCGCAGATCCAATCAAGGAACCACCTCTTGTTACAGCAAATACTGTTCTTTCAATTTTGGCACTAGATTATCCTGCAAACAAAATTTCATGTTACGTTTCTGATGACGGCGCTTCCATGCTCACCTTTGAAGCTCTTCAAGAAACAGCTGAATTCGCGCAAAAATGGGTACCTTTCTGTAAACAATTCTCTACAGAGCCGCGAGCACCTGAGAAGTATTTCTCTGAGAAGATAGACTTTCTTAAGGATAAGCTTCAACCCACATACGTAAAAGAACGCCGTGCTATGAAGAGAGAATATGAAGAGTTTAAGGTGAGAATAAATGCGCTTGTGGCTAAATCTATGAGAGTTCCATCAGAAGGTTGGAGTATGAAGGATGAAACACCATGGCCGGGAAACAATACAAAAGATCATCCAAGTATGATACAAATACTTCTTGGTCACAATGGAGGAGACAGTGAAGGAAATGAACTTCCATCTCTTGTCTACATTTCTAGAGAAAAAAGACCTGCATTTCAACATCACACAAAGGCCGGTGCAATGAACGCCTTGCTTCGTGTATCGGCAGTATTGAGCAATGCTCCTTTTGTGCTCAACTTGGACTGCAATCATTATGTGAATTACAGCAAAGTTGTGAGAGAAGCCATGTGTTTCTTTATGGACATTCAACTTGGGAATAGTATTGCCTTTGTTCAGTTTCCACTAAGATTTGATAGTCTTGATAGGAATGATCGTTATGCCAACAAAAACACTATTTTATTTGATATCAACTTGAGGTGCCTAGATGGAATTCAAGGACCTGTTTATATTGGATCAGGTTGTATATTCAGAAGGAAAGCTTTAAATGGCTTTGATCCTCCTAAGGCGTCAAAACGCTCTCGAGTCGTACAAGTTCACTCAAAACAGGATGAAAATGAAGAGGATGGGAGCATTATAGAAGCAACTGATGAAGAGAAGCAGCCATTGCAATTAGATAAGGATACTGAAAACAAATTTGGAAAGTCTACACTCTTCATGAATTCTTCATTGACAGAAGAAGGTGGCGTAGATCCTTCTTCAACTCAAGAAGTCCTGCTTAAAGAGGCCATTCATGTCATGAGTTGTAGCTACGAAGACCGGACACTGTGGGGATACGAGGTTGGTATGAGCTATGGATCTATAGCATCAGATATTCTAACAAGTTTAAAGATGCATACTCGTGGTTGGAGATCGGTATACTGCATGCCGAAAAGAGCTCCTTTTAGGGGAACAGCCCCAATCAATCTTACAGAAAGACTTAACCAAGTTCTTAGATGGGCAGTAGGATCACTTGAGATTCTATTCAGCCACCACTGTCCAATATGGTATGGTTTTAAAGAAGGAAGACTCAAGCTGCTCCAAAGGATTGCCTATATTAACAGCACTGTCTATCCTTTTAGTGCATTGCCTCTCATAATATATTGTATCGTTCCGGCTGTCTGCTTGCTCACTGATAAATTCATCACACCATCGGTAGGAACTTTTGCAAGTCTGGTATTCATTTCTCTATTCATATCAATCTTCGCCTCTTCTATTCTTGAATTGAGATGGAGTGGAGTTAGTCTTGAGGAATGGTGGAGAAATCAACAATTTTGGGTCATTGGAAGTATATCAGCACATCTCTTTGCAATTGTACAAGGCCTAATGGGAAGATTCCTTGGTAGATTTAATGCACATTTCAACATTGTATCGAAGGCACCAGACGATGATGGCGAGTTTAACGAACTGTACACCATTAGATGGACAGTACTACTAATACCTCCAACCACAGTGACTATATTCAACATTATCGGTATTGTTGCTGGTTTCACAGATGCTATAAATAGTGGTGAACATGAATGGGGAGCATTGATTGGGAAACTGTTCTTTTCTTCATGGGTTATTGCTCATCTTTATCCTTTCCTTAAAGGACTAATGGGAAGACAGAATAGAACACCAACTCTTGTTGTCATTTGGTCTGTGCTTTTGGCTTCTATCTTTTCTTTGGTTTGGGTAAGAATCGACCCTTTTGTGTTGAAAACTAAGGGGCCTGATGTTAAGCAATGTGGAATTAGTTGTTGA 2949 0.4018 MEAKSGLFAGSLNSNELVVIQKQNEPKAVKNLDGQDCEICGDSVGRTVEGDLFVACEECGFPVCRPCYEYERKEGSQNCPQCHTRYKRIKGSPRVEGDEDEEDVDDIEQEFKMEEEKYKLMHQDNMNSIDDDDTKYREQPLYSHSIGENSDGAKLDNKEKTDEWKQQGNLLIETDAVDPEKAMKDETRQPLSRKVAIPSGRLSPYRMMVVARLILLLLFFEYRISHPVPDAIGLWFISVSCEIWLALSWIVDQIPKWFPIDRETYLDRLSVRFEPENKPNMLSPIDIFITTADPIKEPPLVTANTVLSILALDYPANKISCYVSDDGASMLTFEALQETAEFAQKWVPFCKQFSTEPRAPEKYFSEKIDFLKDKLQPTYVKERRAMKREYEEFKVRINALVAKSMRVPSEGWSMKDETPWPGNNTKDHPSMIQILLGHNGGDSEGNELPSLVYISREKRPAFQHHTKAGAMNALLRVSAVLSNAPFVLNLDCNHYVNYSKVVREAMCFFMDIQLGNSIAFVQFPLRFDSLDRNDRYANKNTILFDINLRCLDGIQGPVYIGSGCIFRRKALNGFDPPKASKRSRVVQVHSKQDENEEDGSIIEATDEEKQPLQLDKDTENKFGKSTLFMNSSLTEEGGVDPSSTQEVLLKEAIHVMSCSYEDRTLWGYEVGMSYGSIASDILTSLKMHTRGWRSVYCMPKRAPFRGTAPINLTERLNQVLRWAVGSLEILFSHHCPIWYGFKEGRLKLLQRIAYINSTVYPFSALPLIIYCIVPAVCLLTDKFITPSVGTFASLVFISLFISIFASSILELRWSGVSLEEWWRNQQFWVIGSISAHLFAIVQGLMGRFLGRFNAHFNIVSKAPDDDGEFNELYTIRWTVLLIPPTTVTIFNIIGIVAGFTDAINSGEHEWGALIGKLFFSSWVIAHLYPFLKGLMGRQNRTPTLVVIWSVLLASIFSLVWVRIDPFVLKTKGPDVKQCGISC* 983
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g1922 982 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 110 IPR013083 -
Mtr8g1922 982 Coils Coil 383 403 - -
Mtr8g1922 982 Coils Coil 97 124 - -
Mtr8g1922 982 ProSiteProfiles Zinc finger RING-type profile. 37 83 IPR001841 -
Mtr8g1922 982 PANTHER CELLULOSE SYNTHASE 1 982 - -
Mtr8g1922 982 SUPERFAMILY RING/U-box 22 105 - -
Mtr8g1922 982 Pfam Cellulose synthase 285 976 IPR005150 GO:0016020|GO:0016760|GO:0030244
Mtr8g1922 982 MobiDBLite consensus disorder prediction 578 607 - -
Mtr8g1922 982 SUPERFAMILY Nucleotide-diphospho-sugar transferases 298 776 IPR029044 -
Mtr8g1922 982 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 427 576 IPR029044 -
Mtr8g1922 982 CDD mRING-HC-C4C4_CesA_plant 35 85 - -
Mtr8g1922 982 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 1 982 - -
Mtr8g1922 982 Pfam Zinc-binding RING-finger 27 104 IPR027934 -
Mtr8g1922 982 MobiDBLite consensus disorder prediction 586 607 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g1922 Mtr-Chr8 28980950 28986893 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g1922 1 982 Cell Wall Biosynthesis AT5G17420 63.654 0.0 1358
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g1922 K10999 - gmx:100777270 1594.71