Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g1897 ATGAATGTTACTCGTTCTGCTTTGAAGCTCCATCTTCAAAATTCACCCATTCGCTACCATCAATTTTTCTTCTTCTCTCGATTCAACAATGCTCTTATTCGCAATCCCACTTTCTCTTCTTCGTCTTCTTCTCTTTTCAATTTCAATGCAACGCGTTTCTTTTCTGTAACCCTTCCACGTCAAACACACCAGACACAACCCTTTGTTGGAAGCGCCGTTTCATCAGAAGATTTCAATGGAAGAGACACTTTCTTTGCTGAGGATAACGTTTCGTGGAGTTCAATTGGTCTTTCTCATACCCTTTCTCGAGCTCTCTCTAATATTGCTCTCAATACACCCTCTCTCGTTCAGGCTTCTTCTATACCATCTGTGTTGTCAGGGAAGGATGTAGTTATTGCTGCAGAGACCGGCAGTGGTAAGACATACAGTTATCTACTTCCTCTCATTGATAAGCTGAGGGGTACAGAGGAATATTCTCTGGATGTTGTATCTGATAAAGAAATCTCTCCGCCGGCCAGGAAAGTTCTGCTCGTGCTTTGTCCGAATGTGCAATTGTGTGAGCAGGTAGTTAGGATGGCTAATAGTCTCTGTGGAGACAATGATGAAACCATTGTTAGTGCTGCAGCCATTTGTGGGAAACAGGGATGGCCAATTCGGGAACCCGATATCATTGTGACAACACCTGCTGCTCTTCTCAATCATGTTGACGTTGATAGAAGACGCCGCATGGAATTTATGCATGGTGTTAAATATGTGGTGTTTGATGAAGCTGATATGCTTCTCTGTGGGAGCTTCCAGAATAAAGTAATCCGCCTGATTAACTTGCTCCGCTATGATGAAAAACTCTTGTCTCGATCGAAAACATCAGTATCAGAGTTGCCAGTGACATTGGAATCTTCTTTGTCGTCGCATGATGCTTCAGAAGGTGAAGAGGAATTTCCAACTGAAGCCATGTCAGACGAGGAGGATGATGATAACGAGGATATTGCCAATATTAATAACGAAGCTGAATCTGTCAAGAAAACAAGAAGAGACTGGAGAAGAGTGAGGAAACATTTTGAGCGTAGTAAACAATATGTTTTTGTTGCAGCTACACTTCCGGTGAATGGAAAGAAAACAGCGGGAGCATTATTGAAACACATGTTTCCTGATGCTGAGTGGGTTAGTGGAAACTATCTTCATTGTCACAATCCAAGATTGAAGCAAAGATGGATAGAAGTGACCGTTGATACACAAGTGAAAGAGCTCATAAGGGCTGTGAATCACAGTTTAAAATTGGAAGATTTGGATATTGGTAGTGGCATTCATAGAACAATGGTGTTTGCCAACACAGTTGAGGCTGTTGAAGCTGTGGTGAAGATATTGGGCTATGCTGGGCTTGAATGTTTACGTTATCATAAGAATTGCACGTTGGATGAGCGGGCACAAACTTTAGTTGATTTCTACGACAAAGGTGGTGTTCTTGTATGTACTGATGCAGCTGCTCGTGGCGTGGATATTCCAAATGTTTCTCATGTTATTCAGGCAGATTTTGCTACTTCTGCTGTAGACTTTTTGCATAGGATTGGTCGTACAGCTAGAGCTGGCCAAATCGGACTAGTTACCAGCATGTATACTGAATCCAACAGAGAGCTTGTAGATGCTGTTCGTCGTGCAGGGGAACTTGGTCTACCTGTGGAGACCGCATTTAGCAGGAAAAGAAGCTTCCGTAACAAGATCAAAAAGAAAGCAAGTGCTAACAAAGTCAGAGATTCAGCAACCATTGAAGAGAGTCTTACAGCGTGA 1785 0.4258 MNVTRSALKLHLQNSPIRYHQFFFFSRFNNALIRNPTFSSSSSSLFNFNATRFFSVTLPRQTHQTQPFVGSAVSSEDFNGRDTFFAEDNVSWSSIGLSHTLSRALSNIALNTPSLVQASSIPSVLSGKDVVIAAETGSGKTYSYLLPLIDKLRGTEEYSLDVVSDKEISPPARKVLLVLCPNVQLCEQVVRMANSLCGDNDETIVSAAAICGKQGWPIREPDIIVTTPAALLNHVDVDRRRRMEFMHGVKYVVFDEADMLLCGSFQNKVIRLINLLRYDEKLLSRSKTSVSELPVTLESSLSSHDASEGEEEFPTEAMSDEEDDDNEDIANINNEAESVKKTRRDWRRVRKHFERSKQYVFVAATLPVNGKKTAGALLKHMFPDAEWVSGNYLHCHNPRLKQRWIEVTVDTQVKELIRAVNHSLKLEDLDIGSGIHRTMVFANTVEAVEAVVKILGYAGLECLRYHKNCTLDERAQTLVDFYDKGGVLVCTDAAARGVDIPNVSHVIQADFATSAVDFLHRIGRTARAGQIGLVTSMYTESNRELVDAVRRAGELGLPVETAFSRKRSFRNKIKKKASANKVRDSATIEESLTA* 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g1897 594 MobiDBLite consensus disorder prediction 298 336 - -
Mtr8g1897 594 Pfam DEAD/DEAH box helicase 116 280 IPR011545 GO:0003676|GO:0005524
Mtr8g1897 594 Pfam Helicase conserved C-terminal domain 436 529 IPR001650 -
Mtr8g1897 594 SMART ultradead3 109 403 IPR014001 -
Mtr8g1897 594 Gene3D - 402 594 IPR027417 -
Mtr8g1897 594 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 121 384 IPR014001 -
Mtr8g1897 594 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 425 577 IPR001650 -
Mtr8g1897 594 MobiDBLite consensus disorder prediction 312 331 - -
Mtr8g1897 594 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 121 541 IPR027417 -
Mtr8g1897 594 SMART helicmild6 449 529 IPR001650 -
Mtr8g1897 594 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 22 62 565 - -
Mtr8g1897 594 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 62 565 - -
Mtr8g1897 594 CDD SF2_C_DEAD 400 538 - -
Mtr8g1897 594 Gene3D - 72 382 IPR027417 -
Mtr8g1897 594 CDD DEADc 101 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g1897 Mtr-Chr8 28731177 28738767 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g1897 343 557 Eukaryotic Initiation Factors Gene Family AT5G11200 26.016 4.68e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g1897 - - gmx:100780518 858.981