Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g1896 ATGAAGAGGTCAAGAGATGATGGTTACATGAGTTCACAGCTCAAACGCCCTGTGCTGTCTTCTAGAGGAGAACCTTCGGGGCAAGCCCAAGTGATGACTGGTGGCCAGAAGTTAACCACAAATGATGCCTTATCATATCTCAAGGCAGTAAGAGAAATGTTTCAAAATGACAAGGAGAAATACGATGAATTTTTGGAAGTCATGAAGGATTTCAAGGCCCAAAGAATTGATACAGCTGGTGTCATAGAAAGAGTGAAGGAGCTGTTTAAAGGGCATAAAGATTTGATTTTGGGATTTAACACCTTTTTGCCAAAGGGATATGCAATCACACTCCCATCGGATGATGAACAGCCTCTACAAAAGAAGCCTGTTGAATTTGAAGAGGCTATAAATTTTGTGGGCAAGATTAAGAATCGTTTTCAAGGCAACGATCGCGTGTATAAGACTTTTTTAGACATACTAAATATGTATAGAAAGGAACTCAAGCCTATCACCGCAGTTTACCAAGAGGTTTCTGCTCTCTTCCAAGACCATGGAGATCTTCTCGAGGAGTTTACTCATTTTCTTCCTGATACTTCAGGAGCAGCCGCTGCACATTTTGCTTCTGCTCGTAATCCTCTCCTTCGAGATAGGAGCTCTGCAATGACAACAGGGAGGCAAATGCATGTTGACAAGAGAGAAAAGACAACAACTTTGCATGCTGATCGCGATCTCAGCGTTGATCATCCTGATCCAGAACTTGACAGAGGTGTGATGAGGACTGATAAGGAGCAGAGAAGACGTGAGAGAGAAAAGGACCGTAGAGAAGAAAGAGATAGGAGAGAACGTGAAAGGGATGATAGAGATTATGATAATGATGGTAATCTGGAGCGTTTACCCCACAAGAAAAAGTCTGTTCATAGAGCTACGGACCCTGGTACTGCTGAACCATTGCATGATGCAGATGAAAAGCTCGACCTTCTCCCTAACTCGTCCACTTGTGAGGATAAAAGTTCTTTGAAAAGTTTGTGCAGTCCGGTGCTTGCTTTCCTTGAAAAAGTCAAGGAGAAGTTAAAAAATCCTGATGATTACCAGGAATTTTTGAAGTGCCTGCATATCTACAGCAGGGAAATAATCACCCGACAAGAACTACTGGCATTGGTGGGTGATTTACTGGGAAAATATGCCGATATTATGGAGGGATTTGATGATTTTGTGACACAATGTGAGAAGAATGGATTCCTTGCTGGTGTCATGAATAAAAAATCTTTGTGGAATGAAGGACATGGGCAGAAACCACTGAAGGTAGAGGAGAAGGACAGAGATCGGGGCAGGGATGATGGGGTGAAAGAAAGGGACCGGGAACTCCGAGAAAGAGACAAATCCACTGGAATTTCCAACAAGGATGTCTCTATTCCTAAGGTGTCTCTAAGCAAGGACAAGTATGTAGGAAAGCCTATAAATGAACTGGACCTTTCTAACTGTGAACAATGTACTCCCAGCTACCGTCTCCTACCCAAAAATTACCCAATACCATTAGCTAGCCAGAAAACTGAACTTGGCGCCAAAGTATTGAATGATCACTGGGTTTCTGTAACGTCAGGAAGTGAGGATTATTCCTTTAAACACATGCGCAAAAATCAGTATGAAGAGAGCTTGTTTAGATGCGAAGACGACAGGTTTGAACTTGATATGTTGTTAGAGTCTATAAATGCAACAAGTAAGAAAGTTGAAGAGATCATAGAAAAAGTTAATGATGATATAATTCCAGGAGATATTCCAATTCGTATTGAGGAGCATTTATCAGCTCTAAATCTTAGGTGCATTGAACGATTATATGGTGACCATGGGCTTGATGTGATGGAAGTGTTGAAAAAGAATGCATCTCTAGCCTTGCCAGTGATATTAACCCGCCTGAAGCAAAAACAGGAGGAGTGGGCAAGATGCCGTGAAGATTTTAATAAAGTTTGGGCTGAAATATATGCAAAGAATTATCACAAATCACTTGATCATCGAAGTTTTTACTTTAAGCAGCAGGATACAAAAAGCTTGAGCACTAAAGCCTTATTGGGAGAGATCAAAGAAATTAGCGAGCAGAAACGAAAAGTAGATGATGTTCTTCTTGCAATTGCTGCTGGAAATAGACGGCCTATTCTTCCTAACTTGGAATTTGAGTATCCTGATCCAGAGATTCAGGAAGATCTGTATCAACTCATAAAATATTCATGTGGAGAAGTTTGTTCAACCGAACAATTGGATAAAGTCATGAAGATTTGGACAACATTTTTAGAACCCATGCTCGGTGTTCCTTCTCGACTGCGTGTTCCCGAAGACACAGAAGATGCTGTCAAGGCCAAGAAAGATTCTGCAAAAACTGGTACTGCAAGTATTGCCAAGGGTGATAGTAGTCCTGGTGTTGGTGCTACCGTAATGAGTCCTAAGAATACATTTGAACAATCAAATTCTTGCAAAGAATGGCAAACAAATGGGGTTGGCGGGGTTAAAGAGGATGATTGTCTCAAATCAGACCGTTCTGTGCCTAAAACTGAAACTTTGGGAAGTAGTACCCTGCAGGGTAATGTTCATATAAATGCATCCATTCCTGACGAAGTATCAAGAGTCAATAAGCAAGATCATTCCATTGAACAGTTGGTGAATGCTAATGTCTCAATGTCCTCTAGAGTGGAGCAAAGTAACGGAAGAACAAACATAAATAATGCATCAGGACTTGCTGCAACTCTGTCTAGACCTGGTTATGTTTATAGAGAGGGAGGGCTTGATTTACCTTCATCAGAGGGTGCTGATTCTACAAGACCAGATACGTCCACAAATGGGGCCATCATCGAAGACACCAAAGCTCACAGATGTCACAAAGAATCAGTTGGACACTTCAAAAGTGAAAGAGAAGAGGGTGAATTGTCTCCTAATGGAGACTTTGAAGAGGATAACTTTGCAGTTTATGCAAATGCTGGTCTGGAGGCAGTGCATAAAGGAAAAGATTGTAATACCAGTCAACACTACCAAAATAGACGCGAGGAACAAATTTGTGGGGTAGCTGGAGGTGAAAATGATGATGAAAGTGACGGAAGTCCTCATAGATCATCAGACGACAGTGAAAATGCATCTGAGAATGGTGATGTTTCTGGTACTGAGTCTGCTGATGGTGAGGAATGTTCTCGAGAAGAACATGAAGAGGATGGCGATCATGATAACAAGGTCGAGAGTGAAGGTGAAGCTGAAGGAATGGCTGACGCCAATGATGTTGAAGGAGATGGAGCCTCGCTGCCATACTCAGAGCGCTTTCTTCTTACTGCAAAGCCTCTTGTAAAATATGTCAGCCCGGTGTTTCATGGGAAAGAAGAGAATGTTCAAATTTTTTACGGAAATGATTCCTTTTATGTGCTGTTTAGACTTCATCAGACATTGTATGAGAGAATACGATCGGCAAAGATTAACTCATCTTCTGCTGAAAAGAAATGGAGAGCTTCAAATGATACAAGTTCCACTGATCGATATGCCAGGTTCATGAATTCTCTTTACAGTTTACTGGATGGTTCTTCTGATAATTCAAAATTTGAAGATGACTGTCGGGCTATTATTGGAACTCAGTCGTATGTCTTGTTCACGTTAGACAAGCTGATATATAAACTTGTTAAGCAGCTTCAAGCTGTTGCCAGTGGCACTGATGAGATGGATAACAAACTTCTTCAACTATATGCATATGAACAATCAAGAAAATCTGGAAGCTTTTTTGATGTAGTTTATCATGAAAATGCCCGTGTTCTTCTTCATGATGAGAACATATATCGTATTGAATGTTCACCTACCCGATTGTCTATTCAGTTGATGGACTATGGACATGATAAGCCAGAAGTGACTGCTGTGTCAATAGATCCTAATTTTTCAACCTATTTGCACAATGATTTCCTATCTGTTGTCCCCGACAGTAAGGAGAAGTCAGGAATTTTCTTAAAAAGGAATAAACTAAAATGTGCCAGGAGTGATGAACTTTCAAGCCAGGTTATGGATGGAATACAAGTTATCAATGGTTTGGAGTGTAAAATTGCTTGCGGTTCATCCAAGGTTTCATACGTTTTAGATACCGAAGACTCTTTGATTCGAACAAAAAGGAAAAGGGGAAGTTTGCATCAGAATAATTCATATTGTGGGCCGACAATGTCTTCAAACACTTGTTCAAGCAGAGTACAGCGGTTCTACAAATTATTTTCCATCAAATGA 4218 0.4075 MKRSRDDGYMSSQLKRPVLSSRGEPSGQAQVMTGGQKLTTNDALSYLKAVREMFQNDKEKYDEFLEVMKDFKAQRIDTAGVIERVKELFKGHKDLILGFNTFLPKGYAITLPSDDEQPLQKKPVEFEEAINFVGKIKNRFQGNDRVYKTFLDILNMYRKELKPITAVYQEVSALFQDHGDLLEEFTHFLPDTSGAAAAHFASARNPLLRDRSSAMTTGRQMHVDKREKTTTLHADRDLSVDHPDPELDRGVMRTDKEQRRREREKDRREERDRRERERDDRDYDNDGNLERLPHKKKSVHRATDPGTAEPLHDADEKLDLLPNSSTCEDKSSLKSLCSPVLAFLEKVKEKLKNPDDYQEFLKCLHIYSREIITRQELLALVGDLLGKYADIMEGFDDFVTQCEKNGFLAGVMNKKSLWNEGHGQKPLKVEEKDRDRGRDDGVKERDRELRERDKSTGISNKDVSIPKVSLSKDKYVGKPINELDLSNCEQCTPSYRLLPKNYPIPLASQKTELGAKVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESINATSKKVEEIIEKVNDDIIPGDIPIRIEEHLSALNLRCIERLYGDHGLDVMEVLKKNASLALPVILTRLKQKQEEWARCREDFNKVWAEIYAKNYHKSLDHRSFYFKQQDTKSLSTKALLGEIKEISEQKRKVDDVLLAIAAGNRRPILPNLEFEYPDPEIQEDLYQLIKYSCGEVCSTEQLDKVMKIWTTFLEPMLGVPSRLRVPEDTEDAVKAKKDSAKTGTASIAKGDSSPGVGATVMSPKNTFEQSNSCKEWQTNGVGGVKEDDCLKSDRSVPKTETLGSSTLQGNVHINASIPDEVSRVNKQDHSIEQLVNANVSMSSRVEQSNGRTNINNASGLAATLSRPGYVYREGGLDLPSSEGADSTRPDTSTNGAIIEDTKAHRCHKESVGHFKSEREEGELSPNGDFEEDNFAVYANAGLEAVHKGKDCNTSQHYQNRREEQICGVAGGENDDESDGSPHRSSDDSENASENGDVSGTESADGEECSREEHEEDGDHDNKVESEGEAEGMADANDVEGDGASLPYSERFLLTAKPLVKYVSPVFHGKEENVQIFYGNDSFYVLFRLHQTLYERIRSAKINSSSAEKKWRASNDTSSTDRYARFMNSLYSLLDGSSDNSKFEDDCRAIIGTQSYVLFTLDKLIYKLVKQLQAVASGTDEMDNKLLQLYAYEQSRKSGSFFDVVYHENARVLLHDENIYRIECSPTRLSIQLMDYGHDKPEVTAVSIDPNFSTYLHNDFLSVVPDSKEKSGIFLKRNKLKCARSDELSSQVMDGIQVINGLECKIACGSSKVSYVLDTEDSLIRTKRKRGSLHQNNSYCGPTMSSNTCSSRVQRFYKLFSIK* 1406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g1896 1405 MobiDBLite consensus disorder prediction 917 948 - -
Mtr8g1896 1405 SUPERFAMILY PAH2 domain 119 191 IPR036600 GO:0006355
Mtr8g1896 1405 ProSiteProfiles PAH domain profile. 36 106 IPR003822 GO:0006355
Mtr8g1896 1405 MobiDBLite consensus disorder prediction 1012 1084 - -
Mtr8g1896 1405 Pfam Paired amphipathic helix repeat 59 103 IPR003822 GO:0006355
Mtr8g1896 1405 Pfam Paired amphipathic helix repeat 146 189 IPR003822 GO:0006355
Mtr8g1896 1405 Pfam Paired amphipathic helix repeat 355 398 IPR003822 GO:0006355
Mtr8g1896 1405 SUPERFAMILY PAH2 domain 36 105 IPR036600 GO:0006355
Mtr8g1896 1405 MobiDBLite consensus disorder prediction 14 35 - -
Mtr8g1896 1405 SMART hdac_interact2seq4b 487 587 IPR013194 -
Mtr8g1896 1405 ProSiteProfiles PAH domain profile. 329 402 IPR003822 GO:0006355
Mtr8g1896 1405 Gene3D Paired amphipathic helix 42 104 IPR036600 GO:0006355
Mtr8g1896 1405 MobiDBLite consensus disorder prediction 220 315 - -
Mtr8g1896 1405 MobiDBLite consensus disorder prediction 424 458 - -
Mtr8g1896 1405 MobiDBLite consensus disorder prediction 208 315 - -
Mtr8g1896 1405 MobiDBLite consensus disorder prediction 953 972 - -
Mtr8g1896 1405 MobiDBLite consensus disorder prediction 1 35 - -
Mtr8g1896 1405 Coils Coil 560 580 - -
Mtr8g1896 1405 Gene3D Paired amphipathic helix 333 404 IPR036600 GO:0006355
Mtr8g1896 1405 MobiDBLite consensus disorder prediction 422 460 - -
Mtr8g1896 1405 Pfam C-terminal domain of Sin3a protein 1119 1365 IPR031693 -
Mtr8g1896 1405 PANTHER SIN3B-RELATED 1 1375 IPR039774 GO:0003714
Mtr8g1896 1405 MobiDBLite consensus disorder prediction 1046 1072 - -
Mtr8g1896 1405 MobiDBLite consensus disorder prediction 927 941 - -
Mtr8g1896 1405 ProSiteProfiles PAH domain profile. 122 192 IPR003822 GO:0006355
Mtr8g1896 1405 Pfam Sin3 family co-repressor 489 578 IPR013194 -
Mtr8g1896 1405 MobiDBLite consensus disorder prediction 778 802 - -
Mtr8g1896 1405 SUPERFAMILY PAH2 domain 340 402 IPR036600 GO:0006355
Mtr8g1896 1405 MobiDBLite consensus disorder prediction 1018 1033 - -
Mtr8g1896 1405 PANTHER PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 2 ISOFORM X1 1 1375 - -
Mtr8g1896 1405 Gene3D Paired amphipathic helix 120 193 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g1896 Mtr-Chr8 28698997 28717827 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g1896 38 119 WRKY Transcription Factor Family AT4G12020 59.756 3.56e-22 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Mtr8g1896 Sin3a_C 3.5e-57 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g1896 K11644 - gmx:100781798 1993.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g1498 5 15932612 15947137 Mtr8g1896 8 28698997 28717827 PCT