Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g1880 ATGGATCCAGGAGCGATGATGAACGAGGGTTCATTTCCGAATGGGAATGGAAATACGACGCCGTTTAGTTTAGCGGAGATCTGGCAGTTTCCAGCGGCGATTAATGGCGGCGGAGGTGGATTAGGACTAAGAAGGCCGCAGTTTGGGAACGGTTTAGGACAGTATGGTGAGTTTGGACCCGGTTTGAACCGGGATGGTAATGGTTTGAACCATGCTGGTGGTGGTGGTAAGAAGAGGCGTGACTCTGAAGATGATTCTGCTAAGTGTGTTTCCACCAGTAATGGCGGTGCCAATGCCGTGAATGATAGTGATGGAAAACGGACTAAAGCATCGGGGAACAAGAATGAGGGTGGTGATGGTAAAGTTGAAGGAGAAGCCAGTTCAGGAAAGCATGCGGAGCAAAGCAGTAAGCCACCTCCTTCTGACCCTCCTAAGCAAGATTACATCCATGTTCGAGCTAGAAGGGGTCAAGCTACTGATAGCCACAGTCTTGCAGAACGTGCCAGAAGGGAAAAGATTAGTGAAAGGATGAAAATTCTACAGGATTTAGTTCCTGGTTGTAATAAGGTTATTGGGAAAGCATTGGTGCTTGATGAGATAATTAATTATATTCAATCACTTCAGCGCCAAGTGGAGTTTTTATCGATGAAACTTGAAGCAGTTAATTCAAGACTCAATACCGGCATTGAAGCCTTTCCTCCAAAAGATTATGGTCAACAAACGTTTGATCTTGCCGGCATGCCATTTGTTTCACAAGCTACAAGAGAGCCAAGCAGAGGTTCTTCACCAGAATGGTTACATATGCAGGTAGGTGGTGGTTTCGAAAGAACGACGTAG 837 0.46 MDPGAMMNEGSFPNGNGNTTPFSLAEIWQFPAAINGGGGGLGLRRPQFGNGLGQYGEFGPGLNRDGNGLNHAGGGGKKRRDSEDDSAKCVSTSNGGANAVNDSDGKRTKASGNKNEGGDGKVEGEASSGKHAEQSSKPPPSDPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRLNTGIEAFPPKDYGQQTFDLAGMPFVSQATREPSRGSSPEWLHMQVGGGFERTT* 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g1880 278 PANTHER BNAC05G07950D PROTEIN 1 278 - -
Mtr8g1880 278 MobiDBLite consensus disorder prediction 107 130 - -
Mtr8g1880 278 Gene3D - 154 230 IPR036638 GO:0046983
Mtr8g1880 278 MobiDBLite consensus disorder prediction 34 147 - -
Mtr8g1880 278 SMART finulus 163 213 IPR011598 GO:0046983
Mtr8g1880 278 CDD bHLH_AtBPE_like 148 232 - -
Mtr8g1880 278 MobiDBLite consensus disorder prediction 253 278 - -
Mtr8g1880 278 Pfam Helix-loop-helix DNA-binding domain 161 208 IPR011598 GO:0046983
Mtr8g1880 278 Coils Coil 204 224 - -
Mtr8g1880 278 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 1 278 IPR024097 GO:0006355
Mtr8g1880 278 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 157 207 IPR011598 GO:0046983
Mtr8g1880 278 MobiDBLite consensus disorder prediction 1 21 - -
Mtr8g1880 278 MobiDBLite consensus disorder prediction 88 106 - -
Mtr8g1880 278 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 155 224 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g1880 Mtr-Chr8 28502639 28506060 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g1880 1 236 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G59640 57.317 2.58e-74 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mtr8g1880 HLH 2.2e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g1880 - - gmx:100784478 381.719