Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g1877 ATGGAGATAAATGAATGTCAACCAATTGAAACTGATGAGCCTAGAGATATTTATCTTGGTCAAGTTGTAAATAGCAAAGATGAAGCTTATGACTTATACCAAGAGCATGCTTTCAAAACAGGTTTTAGTGTAAGAAAGGGGAAGGAGTTATATTATGATAATGAGAAAAAGAAAACACGTTTGAAGGACTTTTATTGTTCCAAACAAGGGTTTAAAAACAATGAACCTGATGGTGAAGTGGCTTATAAAAGAGCTGATTCAAGAACAAATTGCTTAGCTATGGTCAGATTTAATGTGACCAAGGAAGGAGTGTGGAAAGTTACCAAGTTGATATTGGATCACAATCATGAATTTGTACCACTTCAGCAAAGATATTTGTTACGTTCTATGAGAAATATGTCAAATCTCAAAGAAGACCGCATAAAGTCTTTGGTGAATGATGCCATTAGAGTTACAAATGTTGGGGGTTATTTAGGGAAAGAAGTTGGTGGAGTTGACAAACGTGGTGTAATGTTGAAAGATATGCATAATTATGTCTCCACTGGAAAGTTGAAATTTATCGAAGCCGGAGATGCTCAATCTTTATTGAATCACTTACAAAGTAAACAAGCACAAGATTCCATGTTCTATTACAGTGTACAGTTAGACCATGAATCACGTTTGACCAATGTCTTTTGGAGAGATGGTAAATCTGTAGTTGATTATAATTGCTACGGGGATGTTGTGATTTTTGACACTACATATCGTAGTAATAAATACAACTTGATTTGTGCCCCCTTTGTTGGTGTAAATCATCACTGGCAAAATGTCATGTTTGGTTGTGCCTTGTTATTTGATGAAAGTGAGGTTTCTTTTGCTTGGTTGTTCAAAGCATTTTTGGAGAGTATGGGAAGCCAACAACCAAAAACAATCTTTACAGCTCATCATCCAGTCATGGCTAAAGTGATTGGAGAGGTAATGCCAAATGCATGTCATCGTTTATGTTTATGGCACATAGCTAAGAATGCTCCTTCACATTTGGGTTCTCTCATTTCTGATCAAAAGTTTCAAAACTTATTTAGTAAATGCATGGAAGGTTGTGATTCAGAAGAAGAATTTCAAAGAACTTGGGATGAGATGATGAATGTGTATACGCTTCAAGATCATCAATGGTTGATCAGTATGTATGAAATTCGCCATAAGTGGAGTACTGCTTATAGCAAGAATGTATTCTCTGCTGGTATCAAGTCCTGCCAAAGGATTGAGAGTACAAACAATGTGTTGGATGAGATTAGAGAGAAAACAACAACTCTCACACAATTTTTAGTGGCATTTGAGAAGATGTTGAAAAAGTGGCGCCGCATAGAGGTTGAGGAGGAATTCAAAAACAGACAAAGTACACCTCCTCTTGTTATAAATATTAGTGAAACATTACGGCATGCATCTACGGTATATACTCACAAAGTCTTCAATATTTTTCTAAATGAGTATCTTGAAGGAACAGGTGGAAGCACTTCTATAGAGATTAGTCAATCCAATAATCTGTCAAATCATGAAGTCATGTTGAACCACAAGCCTAATAAAAAATATGCGGTGACATTTGACTCTTCTAATATGAAGATTAATTGTAGTTGCCGCAAGTTTGATTCAATGGGCATTCTTTGTAGTCATGCGTTACGGATTTATAACATTAAAGGTATTTTAAGAATACCTGACCAATACTTCTTAAAAAGATGGTCAAAAAATGCAAGGTCCGTGATTTATGAGCACATGCCTAGGGGCATGGGAGAAGATTCTACCTCCAATTCAGTGATCAATGATGATGATGCTGGTATTCTTTATCGCAATGCTATTATGACGTCATTCTACTATCTAGTTTTGGAAAGTCAAGACAGCAAAGAAGCTCAAAATATTATGTGGAAATTACTTGATATTGGAGTTGAGAGGGTGCGAAAAGGTGTTGGCAAGGCCAATTTAAATTCAGATGTAGAAACAATGGAGACAAATGTCAATGAAAATGAGGAAACATGCTTCAGACCAATGGTCTGA 2028 0.3605 MEINECQPIETDEPRDIYLGQVVNSKDEAYDLYQEHAFKTGFSVRKGKELYYDNEKKKTRLKDFYCSKQGFKNNEPDGEVAYKRADSRTNCLAMVRFNVTKEGVWKVTKLILDHNHEFVPLQQRYLLRSMRNMSNLKEDRIKSLVNDAIRVTNVGGYLGKEVGGVDKRGVMLKDMHNYVSTGKLKFIEAGDAQSLLNHLQSKQAQDSMFYYSVQLDHESRLTNVFWRDGKSVVDYNCYGDVVIFDTTYRSNKYNLICAPFVGVNHHWQNVMFGCALLFDESEVSFAWLFKAFLESMGSQQPKTIFTAHHPVMAKVIGEVMPNACHRLCLWHIAKNAPSHLGSLISDQKFQNLFSKCMEGCDSEEEFQRTWDEMMNVYTLQDHQWLISMYEIRHKWSTAYSKNVFSAGIKSCQRIESTNNVLDEIREKTTTLTQFLVAFEKMLKKWRRIEVEEEFKNRQSTPPLVINISETLRHASTVYTHKVFNIFLNEYLEGTGGSTSIEISQSNNLSNHEVMLNHKPNKKYAVTFDSSNMKINCSCRKFDSMGILCSHALRIYNIKGILRIPDQYFLKRWSKNARSVIYEHMPRGMGEDSTSNSVINDDDAGILYRNAIMTSFYYLVLESQDSKEAQNIMWKLLDIGVERVRKGVGKANLNSDVETMETNVNENEETCFRPMV* 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g1877 675 Pfam MULE transposase domain 241 335 IPR018289 -
Mtr8g1877 675 PANTHER OS12G0160900 PROTEIN 12 660 - -
Mtr8g1877 675 Pfam SWIM zinc finger 525 554 IPR007527 GO:0008270
Mtr8g1877 675 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 12 660 IPR031052 GO:0006355
Mtr8g1877 675 Coils Coil 649 669 - -
Mtr8g1877 675 Pfam FAR1 DNA-binding domain 32 120 IPR004330 -
Mtr8g1877 675 SMART 26again6 534 561 IPR006564 GO:0008270
Mtr8g1877 675 ProSiteProfiles Zinc finger SWIM-type profile. 523 559 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g1877 Mtr-Chr8 28441701 28445272 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Mtr8g1877 MULE 1.6e-23 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g1877 - - lja:Lj4g3v2120630.1 986.097