Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g1873 ATGGATAAGTCACTTGATTTGGTGAATGACATTGTACCTGGGCGATTAAATTGGAGGATTAGAGTCAGAGTGGTTCGTATGTGGGAGGTTCCAACTTTTCTGAAACCGAACCAAGCTAATTCACTAGAGATGGTTTTATTGGATCAGATGGGAGTTAAGATTCAGGCAATTGTTAGGAAGCAACTTATTTATGTCTTTCAGAAGAGATTGCGGGAGGGTGAGGTGTATAATATATCATATTTTTCTGTTGCACCAAGTACTGGATCGTATCGTGCTGCCACGCATCCATACAAGATAGTATTCCAGATGACAACTAAAGTACAATCATGTACCAGTGCAACCATTCCACTGTATGGGCTCTCTTTCACGTCCATTGTTGATGTATCCAATCATACGGTTGAGTATGATTATCTGGTTGATGTCATGGGGCTGGTCACTGCCGTTTCTGAAGAGAGGGAGTATGTGAGGGATGGTAGTGTTACTAAGATGATTATCTTTGAGGTGACGGATCACAGTGGCAAAATTGAATGTGCTTTGTTCGGAGAATATGTTGCATTGTGGAATGGATTTGTGTCTAAGGGGTTTGAAGACAAGGCAACTTTGCAGAATGTTAAGGGTACCACAAGGCTTATAGTGAATCCAGATGTTCCTGAGGTTATTGCGTTTAAAGATCGTTTAATTGGCTTAGGTATCCAGGTCCCTCCAACTTTGACCGTTCTTGGTGGGCCATCAAAGCCTTCTATGGAGGAGGAGTTTCTGCGTATGTATCCTAAGAAGACCATATCACAATTGTTTAATTCTGAAGAGGATGGGTTTTTCGTTGTTAGTGCTATTGTGAGTGGCTTTGTTGAGGGGGAAGAATGGTGGTATCCTGCTTGCAAGTGTCATAGGAGTGTTACTGCAGATTCTGGTGCATACTACTGCAAGGGTTGTGATAAGCATGTTATACAAATGGTTCCTAGGTACAAGATCAAATTGAGGGTTGATGATGGTACTGGGGATTCTGTGTTTGTGTTGTTTGACAGTGATGTTCATTACCTGCTGGAGAAGCAGTGTTCTGTGTTGGTCGCGAAGTCTAAGGGTGACGATGTTGGATTTTATCCTCCTGAAATTGTTATGTTGAAGGGAAAGAGGTTTCTTTTTAAAGTGGATAAGCCTGTTATATCTGGCGGTTTCTTTGATGGTTCCTACAGAGTTAAGAGGGTTTGTGCTGACAGTAGTATTGTTGCAAAATTTGCTATGAATGGATATAATTACACACCTACTGAGTCTATTCGTAAGGGGAAGATGGTGTTTGATGAGTGTTCTCCTTCTCCTCTGGATGGTGGCGGTGTTTCGGTTGGTGTGGCTGACACTGACTGTAATGCGGCATCTCATGTTTCATTGGATGGTGATTTTAGTTTGGCTGATGCTGATATTGCTTCAAGCAACAGTGAGTTTTCGCTTTCTAGCCCGGATGCTCTTTGTACATTAGGTGATGATACAACTAACTCAAACACGATCGGAGCTGAGCACCTTCTTGCTGAATTCACCGGTACTCCTGAAAGTGAAGATGATGACGAATCCCAGGCTGAGATAGAGGAACTGAACTATACAAAGCGAAATCTGGACAGGGTCTTTGATGTTGTGGACGCTGCTGAGGCTGAACCATCTGCGAAGCGTAGGCAGCCTAGGAAGTGA 1680 0.4292 MDKSLDLVNDIVPGRLNWRIRVRVVRMWEVPTFLKPNQANSLEMVLLDQMGVKIQAIVRKQLIYVFQKRLREGEVYNISYFSVAPSTGSYRAATHPYKIVFQMTTKVQSCTSATIPLYGLSFTSIVDVSNHTVEYDYLVDVMGLVTAVSEEREYVRDGSVTKMIIFEVTDHSGKIECALFGEYVALWNGFVSKGFEDKATLQNVKGTTRLIVNPDVPEVIAFKDRLIGLGIQVPPTLTVLGGPSKPSMEEEFLRMYPKKTISQLFNSEEDGFFVVSAIVSGFVEGEEWWYPACKCHRSVTADSGAYYCKGCDKHVIQMVPRYKIKLRVDDGTGDSVFVLFDSDVHYLLEKQCSVLVAKSKGDDVGFYPPEIVMLKGKRFLFKVDKPVISGGFFDGSYRVKRVCADSSIVAKFAMNGYNYTPTESIRKGKMVFDECSPSPLDGGGVSVGVADTDCNAASHVSLDGDFSLADADIASSNSEFSLSSPDALCTLGDDTTNSNTIGAEHLLAEFTGTPESEDDDESQAEIEELNYTKRNLDRVFDVVDAAEAEPSAKRRQPRK* 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g1873 559 Gene3D - 114 230 IPR012340 -
Mtr8g1873 559 Gene3D - 5 110 IPR012340 -
Mtr8g1873 559 CDD RPA1_DBD_B_like 140 227 - -
Mtr8g1873 559 SUPERFAMILY Nucleic acid-binding proteins 256 383 IPR012340 -
Mtr8g1873 559 CDD RPA1_DBD_A_like 19 107 - -
Mtr8g1873 559 PANTHER REPLICATION FACTOR A 1, RFA1 20 356 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Mtr8g1873 559 SUPERFAMILY Nucleic acid-binding proteins 120 226 IPR012340 -
Mtr8g1873 559 CDD RPA1_DBD_C 262 383 IPR013955 -
Mtr8g1873 559 Gene3D - 247 390 IPR012340 -
Mtr8g1873 559 SUPERFAMILY Nucleic acid-binding proteins 6 112 IPR012340 -
Mtr8g1873 559 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 20 356 - -
Mtr8g1873 559 Pfam Domain of unknown function DUF223 43 134 IPR003871 -
Mtr8g1873 559 Pfam Replication factor-A C terminal domain 272 382 IPR013955 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g1873 Mtr-Chr8 28403214 28405670 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g1873 8 332 Core DNA Replication Machinery Family AT4G19130 24.658 5.21e-18 85.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g1873 - - mtr:MTR_8g062030 1112.83