Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g1871 ATGTCTTCTTCTTCTTCATGGCTAACTTCTCCTTCATGCACCCTTTTACCTATAGATTCATCTTCCTCTACACCACAACTCATACTTCAATGGTTAACCTTTCTTTTCCTATCTCCATGTCCTCAAAGACTTCTCCTTTCTGCTCTTGATTCCTTGTTTTTGCTCTCCCTCTTAGCTTCTGCAGTTCACAAACTCTATTCAAGAGCAAACACTACCTCCTCAATCACAAAGCCACTTCTGAAAGAGAAAGATTCTGACTATAGAGTCACTCTTTGGTTCAAGCTAACCTTGTTGGTAACTACCCTTTTGGCTATAACTTACACTGTTCTAGGAATCTTGGCTTTTACTCAAACCAATAACCTTTCTTCATGGAAACAAATAGAAGCACCTTTTCGGTTGTTTCAAGCAGTAGTCAACATTGTGATTGTGATTCTAATGTTACATGAGAAAAAGTTCAAATCTTCCAAACACCCTTTATCACTAAGAATCTATTGGATAGCAAACTTTGTGATTGCTTCTTTGTTTGCTATTTCAGCTGTTTTCCGAATTGTAAATGCCAGTGAGGAGAAGTTGGAACTTAGTTTGAGAATAGATGACATATTCTCATTGGTTAATCTTCCATTATCTTTGTTCTTTTTTGTCATATCCATTAGAGGGTCATCAGGGATTCATGTGATAAGAATATCCGATGTAGTAGCGACATATACATCGGTTCCAACTGATGGAAATTTGAGTCCTTATGCTGGTTCTTCATTTTTGTCCAAAACAGTTTGGTTTTGGATGAACCCTTTGATTAATAAAGGTTACAAAACTCCCCTTAAACTAGAAGATGTTCCTTCACTTCCTCTTGAATTTAGAGCAGAAAAAATGTCAGAAAATTTTATAAACAATTGGCCAAAACCAGAGGAAAATAGTAAGCATCCAGTTATAGTAGCCTTATTTAGGTGTTTTTGGAAACACATAGCTTTCACTGGCTTCCTTGCAATGATTAGGCTTTGTGTTATGTATATTGGTCCACTGTTGATTCAGAGTTTTGTTGATTTCACATCAAGGAAAGATAGTACTACTAGTGAAGGTATTATTTTGATATTGATCCTTTTTGCAGCAAAATCAGTTGAAGTGCTGAGTGTTCATCAATACAACTTCCACTCGCAGAAAATCGGTATGCTTATTCGTTCGAGCATAATTACTTCGGTTTACAAAAAGGGTCTGAGGTTGTCAAGTTCTTCAAGACAAGCTCATGGAACAGGACAGATAGTGAATCACATGGCTGTTGATGCTCAACAACTCTCAGATATGATGATGCAGCTTCACCCTATATGGTTGATGCCATTGCAAGTAGCTGTGGCATTGGCTCTTATGTATAGCTATGTTGGTGTATCAGTACTTGCAGCATTGCTTGGAACTAGCATAGTGTTTCTTTTCGCGCTATATCGAACCAAGAGTAGTAACAACTTTCAGTTTCAGATGATGACAAGTCGCGATTCGAGGATGAAGGCGACAAATGAGTTGCTTAACAACATGCGTGTGATTAAGTTTCAAGCTTGGGAAGAGTATTTCGGTAACAAGATTAAACAGTTTCGTGAATCCGAGCATGGATGGATTGGGAAATTCATGTACTATTTTGCTGTTAACTTTGGAGTTTTGTCTGCTGCACCATTAGTTGTAACTGTTCTTACCTTTGCAACTGCAACTTTTCTTGGATTTCCTTTGAATTCTGGCACTGTTTTCACGATAACTTCGATTATCAAGATACTTCAAGAGCCTTTGAGGACTTTTCCTCAGGCTCTTATCATGATTTCTCAAGCAACAATATCTTTAGGGAGGTTGGATGAGTTCATGACGAGTAAGGAAATGGATGAGAATGCAGTGCAACGAGAGGAGAATTGTGATGGTGATGTAGCTGTGGAGATAAAAGATGGGAAATTCTCATGGGATGATAACGATGAGAACGACGCTCTGAGAGTTGAAGAGTTGGTAATTAAGAAAGGGGATCATGCTGCTGTTGTAGGAACTGTTGGTTCAGGGAAGTCTTCATTATTGGCTTCTGTGTTGGGAGAAATGTTCAAGATCTCAGGACAGGTCAAAGTTTGTGGAACGACGGCGTACGTGGCACAAACATCATGGATTCAGAATGCAACCATCAAAGAAAACATATTGTTCGGTTTACCAATGAACTTGGACAAGTACAGGGAAGCTTTAAGGGTGTGCTGCCTTGAAAAGGATCTTGAAATGATGGAAGATGGTGATGGAACCGAGATTGGAGAACGCGGTATTAACCTCAGTGGAGGCCAGAAACAACGTGTGCAACTAGCTAGAGCTGTGTATCAGGACACTGACATCTATCTCCTTGATGATATATTCAGTGCTGTTGATGCTCAAACAGGATCGTTTATTTTTAAAGAATGTATCATGGGAGCTCTGAAAGATAAGACGGTTTTACTTGTAACACACCAAGTTGATTTCTTGCATAATGTTGACTCTATAATGGTGATGCGTGAAGGGAGAGTAGTGCAAAGTGGAAAGTATGATGAACTTCTCAAAGCAGGTCTAGATTTTGGTGCACTTCTGGAGGCTCATGAATCCTCAATGAAGATGGCAGAAACAAGTGATAAAACTAGTAATGATTCAGCTCAATCTCAAAAACTAGCTCGCATCCCATCGAAAGAAAAAGAAAGCGGGGGCGAAAAGCAGTCTTCTTCTGAAGATCAATCCAAGTCTGAAAAAACTGCAGCAAAGCTCATTGAAGATGAGGAAAGAGAAACTGGACAAGTGAACCTTAATGTATACAAACAATATTTCACAGAAGCATTTGGATGGTGGGGAATAGCACTCGTGCTAGCAATGTCGGTGGCTTGGGTTGCATCATTTTTGGCTGGTGATTATTGGCTAGCATTTGCAACTGCAGATGATTCTAGCATTCTTTCTTCTACTTTCATTACTGTCTATGCTGTAATAGCTGTTGTTGCATGCATAGTTGTTATGGTAAGAGGTTTCTTGTTTACATATTTGGGTTTAAAGACATCTCAAAGCTTCTTCATTGGAATGCTTCAATGTATCCTTCATGCACCAATGTCATTCTTTGATACTACTCCTTCCGGCAGAATTTTGAGTCGTGTATCGACTGATATACTTTGGGTGGATATCGCAATTCCAATGTTTATAAACTTTGTACTGATAGCATACTTACAATTACTCAGTATCGTCATTGTCATATGCCAGAATTCTTGGGAGACTGTCTTCCTCGTAATTCCACTGTTTTGGCTCAACAACCGGTATAGGATATATTATCTTGCAACTTCTAGGGAATTGACTCGCCTTGATTCAATCACAAAAGCTCCAGTGATTCATCACTTTTCAGAGACCATTTCTGGTGTTATGACAATCCGTAGCTTAAGAAAGCAGAATACATTTTGTCAGGAAAATATTGACAAGGTGAATGCAAGTCTAAGAATGGATTTCCATAACAATGGTGCAAATGAATGGCTTGGTTTTCGTTTAGACTATAATGGAGTTGTTTTCCTTTGCACTGCCACCCTTTTTATGATCTTTTTACCAAGTTCTTTTGTTAAGTCAGAATATGTTGGTATGTCTTTATCCTATGGCCTGGCTCTGAGTGGTCTCTTATCATTTTCCATGACTATGAGTTGCAATGTTGAGAACAAAATGGTTTCAGTTGAAAGGATAAAACAGTTTACAAATCTCCCATCAGAAGCTCCTTGGAAAATTGCTGACAAGTCTCCTCCTCAAAATTGGCCTAGTCATGGCACTATAGAGTTAAACAACTTACAGGTTAGGTACAGGGCAAATACTCCTCTAGTTCTTAAGGGAATCTCTCTTACCATTGAAGGTGGAGAAAAAGTTGGTGTTGTTGGTCGTACAGGAAGTGGAAAATCAACACTGATTCAAGTGTTATTTAGGTTGATTGAGCCTTCAGCTGGGAAAGTAATGATTGATGGTATTAACATTTCCAATGTTGGTCTTCATGATTTGAGGTCACGTTTTGGAATTATTCCACAAGAGCCTGTCCTCTTTCAAGGAACAGTAAGAACCAACATTGATCCTCTTGGATTGTATTCTGAAGAAGAAATTTGGAAGAGTCTTGAGCGGTGCCAATTGAAAGAAGTGGTGGCTGCAAAGCCTGAGAAACTTGAGGCTTCAGTGGTTGATGGTGGAGATAATTGGAGTGTGGGACAAAGACAACTTCTATGCTTAGGAAGAATCATGTTAAAACGTAGCAAAATATTATTCATGGATGAAGCAACAGCATCAGTTGATTCACAAACTGATGTTGTAGTACAAAAGATCATCAGAGAGGACTTTGCAGATCGTACAATTGTTAGCATTGCTCACAGAATACCTACAGTTATGGATTGTGACAAGGTTTTGGTCATAGATGCAGGTTTTGCAAAGGAATATGATAAGCCATCACGTTTGCTTGAAAGACCTTCAATTTTTGCAGCATTGGTTAAGGAGTATTCAAATAGATCAACTTAA 4497 0.3883 MSSSSSWLTSPSCTLLPIDSSSSTPQLILQWLTFLFLSPCPQRLLLSALDSLFLLSLLASAVHKLYSRANTTSSITKPLLKEKDSDYRVTLWFKLTLLVTTLLAITYTVLGILAFTQTNNLSSWKQIEAPFRLFQAVVNIVIVILMLHEKKFKSSKHPLSLRIYWIANFVIASLFAISAVFRIVNASEEKLELSLRIDDIFSLVNLPLSLFFFVISIRGSSGIHVIRISDVVATYTSVPTDGNLSPYAGSSFLSKTVWFWMNPLINKGYKTPLKLEDVPSLPLEFRAEKMSENFINNWPKPEENSKHPVIVALFRCFWKHIAFTGFLAMIRLCVMYIGPLLIQSFVDFTSRKDSTTSEGIILILILFAAKSVEVLSVHQYNFHSQKIGMLIRSSIITSVYKKGLRLSSSSRQAHGTGQIVNHMAVDAQQLSDMMMQLHPIWLMPLQVAVALALMYSYVGVSVLAALLGTSIVFLFALYRTKSSNNFQFQMMTSRDSRMKATNELLNNMRVIKFQAWEEYFGNKIKQFRESEHGWIGKFMYYFAVNFGVLSAAPLVVTVLTFATATFLGFPLNSGTVFTITSIIKILQEPLRTFPQALIMISQATISLGRLDEFMTSKEMDENAVQREENCDGDVAVEIKDGKFSWDDNDENDALRVEELVIKKGDHAAVVGTVGSGKSSLLASVLGEMFKISGQVKVCGTTAYVAQTSWIQNATIKENILFGLPMNLDKYREALRVCCLEKDLEMMEDGDGTEIGERGINLSGGQKQRVQLARAVYQDTDIYLLDDIFSAVDAQTGSFIFKECIMGALKDKTVLLVTHQVDFLHNVDSIMVMREGRVVQSGKYDELLKAGLDFGALLEAHESSMKMAETSDKTSNDSAQSQKLARIPSKEKESGGEKQSSSEDQSKSEKTAAKLIEDEERETGQVNLNVYKQYFTEAFGWWGIALVLAMSVAWVASFLAGDYWLAFATADDSSILSSTFITVYAVIAVVACIVVMVRGFLFTYLGLKTSQSFFIGMLQCILHAPMSFFDTTPSGRILSRVSTDILWVDIAIPMFINFVLIAYLQLLSIVIVICQNSWETVFLVIPLFWLNNRYRIYYLATSRELTRLDSITKAPVIHHFSETISGVMTIRSLRKQNTFCQENIDKVNASLRMDFHNNGANEWLGFRLDYNGVVFLCTATLFMIFLPSSFVKSEYVGMSLSYGLALSGLLSFSMTMSCNVENKMVSVERIKQFTNLPSEAPWKIADKSPPQNWPSHGTIELNNLQVRYRANTPLVLKGISLTIEGGEKVGVVGRTGSGKSTLIQVLFRLIEPSAGKVMIDGINISNVGLHDLRSRFGIIPQEPVLFQGTVRTNIDPLGLYSEEEIWKSLERCQLKEVVAAKPEKLEASVVDGGDNWSVGQRQLLCLGRIMLKRSKILFMDEATASVDSQTDVVVQKIIREDFADRTIVSIAHRIPTVMDCDKVLVIDAGFAKEYDKPSRLLERPSIFAALVKEYSNRST* 1499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g1871 1498 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1247 1491 IPR027417 -
Mtr8g1871 1498 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 636 859 IPR003439 GO:0005524
Mtr8g1871 1498 MobiDBLite consensus disorder prediction 868 884 - -
Mtr8g1871 1498 Gene3D ABC transporter type 1, transmembrane domain 905 1239 IPR036640 GO:0005524|GO:0016021
Mtr8g1871 1498 Gene3D ABC transporter type 1, transmembrane domain 293 619 IPR036640 GO:0005524|GO:0016021
Mtr8g1871 1498 ProSitePatterns ABC transporters family signature. 761 775 IPR017871 GO:0005524
Mtr8g1871 1498 Gene3D - 631 863 IPR027417 -
Mtr8g1871 1498 SUPERFAMILY ABC transporter transmembrane region 310 618 IPR036640 GO:0005524|GO:0016021
Mtr8g1871 1498 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 944 1221 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mtr8g1871 1498 PANTHER MULTIDRUG RESISTANCE PROTEIN ABC TRANSPORTER FAMILY PROTEIN 57 1498 - -
Mtr8g1871 1498 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 633 855 IPR027417 -
Mtr8g1871 1498 Gene3D - 1241 1492 IPR027417 -
Mtr8g1871 1498 CDD ABCC_MRP_domain1 636 836 - -
Mtr8g1871 1498 CDD ABC_6TM_ABCC_D1 323 610 IPR044746 GO:0140359
Mtr8g1871 1498 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 322 602 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mtr8g1871 1498 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1258 1492 IPR003439 GO:0005524
Mtr8g1871 1498 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 57 1498 - -
Mtr8g1871 1498 CDD ABC_6TM_ABCC_D2 939 1233 IPR044726 GO:0140359
Mtr8g1871 1498 Pfam ABC transporter transmembrane region 323 590 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mtr8g1871 1498 Pfam ABC transporter transmembrane region 954 1192 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mtr8g1871 1498 MobiDBLite consensus disorder prediction 864 911 - -
Mtr8g1871 1498 SUPERFAMILY ABC transporter transmembrane region 940 1238 IPR036640 GO:0005524|GO:0016021
Mtr8g1871 1498 Pfam ABC transporter 659 786 IPR003439 GO:0005524
Mtr8g1871 1498 Pfam ABC transporter 1275 1423 IPR003439 GO:0005524
Mtr8g1871 1498 SMART AAA_5 1284 1468 IPR003593 -
Mtr8g1871 1498 SMART AAA_5 663 844 IPR003593 -
Mtr8g1871 1498 CDD ABCC_MRP_domain2 1256 1476 - -
Mtr8g1871 1498 MobiDBLite consensus disorder prediction 885 911 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g1871 Mtr-Chr8 28380298 28388453 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g1871 636 870 Calmodulin-binding Proteins AT2G36910 30.980 1.63e-25 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g1871 - K05665 gmx:100780167 2336.61