Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g1864 ATGTTTTTGGATTTTCATGAATCCATAAATGAAAATGTCTCATTTGGTTGTGATTATAAGATTCCAGTGAAAGGAAAAGGTTCGATACCCGAGGAGATTGGCTATGTTGATAAACTTTATCAGCTATTTTTGTATAACAATAGCTTAAGTGGATCTATTCCTTCCAAAATCTTCAACTTGTCATCACTCACACATTTGGAGGTTGAAAATAATAGCCTCTCAGGCACAATTCCATCAAATACGGGATATAGCCTTCCTAGTCTGCAATATCTACACTTGAATGATAACAATTTTGTTGGAAATATTCCAAATAACATATTCAACTCTTCTAATCTTATTGTTTTTCAATTGTATGACAACGCATTCAGTGGAACTCTACCCAGTATTGCTTTTGGAAATTTAGGATTCGTTGAATTCTTTCTCATATATGACAACAATTTGACAATAGATGATTCTCATCAATTCTTTACTTCCTTGACAAATTGTAGATATTTGAAGTATCTAGACTTATCAGGGAATCATATACCCAATCTTCCTAAGTCAATTGGAAACATAAGTTCAGAATACATCAGGGCAGAATCATGTGGAATTGGTGGTTATATTCCCCTAGAAGTTGGAAACATGAGCAAATTGCTATTTTTTGATCTGTATGACAATAATATAAATGGACCAATACCTCGTTCAGTCAAAGGGTTACAGAAACTTCAACATTTGAGTCTTAGCAAGAATGGACTACAAGGATCATTTATTGAAGAGTTTTGTGAAATGAAGAGTTTGGGTGAGTTGTATCTAAACAATAATAAGCTCTCTGGAGTTTTACCAACATGTTTGGGAAATATGATTTCTCTTATAAGGATACATGTAGGATCTAACAGTTTGAACTCTAGAGTACCTTCATCTCTTTGGAGTCTTAGAGATATATTAGAGATAAATTTTTCTTCAAATTCTTTAATTGGTAATCTTCCACCTGAGATTGGGAATTTGAGAGCAATTATACTATTAGACCTATCAAGAAATCAGATTTCAAGCAACATTCCAACAACCATTAATTCCTTACTAACATTGCAGAAGCTCTCCTTAGCAGATAATAAACTGAATGGATCAATTCCCAAATCATTTGGTCAAATGGTAAGCTTGATCTCTTTGGACTTGTCCCAAAATATGTTAACTGGTGTTATTCCAAAATCCTTAGAATCACTTTTGTATCTTGAAAACATCAACTTCTCATATAATAGATTACAAGGAGAGATTCCTGATGGTGGACATTTCAAAAATTTCACAGCTCAATCATTTATGCATAATGAAGCACTTTGCGGCGATCCTCGCCTTCAAGTACCTACATGTGGTAAGCAAGTTAAAAAATGGTCAATGGAAAAAAAGCTTATATTCAAATGCATACTTCCCATAGTTGTGTCAGTCATTTTGGTTGTTGCGTGCATCATACTTTTAAAACATAATAAAAGGAAAAAGAATGAAACTACTCTTGAAAGGGGTTTGTCAACTTTAGGAGCTCCAAGAAGAATATCGTATTATGAACTTGTGCAAGCAACTAATGGATTCAATGAGAGTAATTTCCTTGGAAGGGGGGGATTTGGCTCTGTTTATCAGGGGAAGCTTCCTGATGGTGAGATGATTGCAGTCAAAGTAATTGATTTGCAATCAGAGGCAAAATCAAAGAGCTTTGATGCAGAATGCAATGCGATGAGAAATCTACGGCATCGAAATTTGGTAAAGATTATCAGCAGTTGCTCAAATCTTGATTTCAAATCATTGGTGATGGAGTTCATGTCAAATGGAAGTGTAGACAAATGGTTATATTCAAATAACTATTGTCTAAATTTCTTACAAAGGTTAAATATAATGATAGATGTTGCATCTGCAGTAGAATATCTCCATCATGGTTCTTCAATACCAGTGGTTCATTGCGATCTAAAGCCTTCTAATGTCTTATTGGATGAAAATATGGTTGCACATGTAAGCGATTTTGGTATTGCCAAGCTCATGGATGAAGGACAATCTAAAACTCATACACAAACTTTGGCTACTGTTGGATATCTTGCACCAGAGTATGGATCTAAAGGAATTGTTTCCGTCAAAGGAGATGTGTACAGCTATGGGATCATGTTAATGGAAATCTTCACAAGAAGAAAGCCAACAGATGATATGTTTGTTGCAGAACTAAGCTTGAAGACATGGATCAGTGGATCATTGCCTAATTCAATCATGGAGGTCATGGATTCAAATTTAGTCCAAATAACTGGGGACCAAATTGATGATATATTGACTCACATGTCATATATTTTTAGTTTAGCATTGAATTGCTGTGAAGAATCACCTGATGCCAGAATCAATATGGCAGATGTTATTGCGACGCTAATCAAAATCAAGACTTTGGTTGTTGGTGCAAACACAGTCTAG 2418 0.3478 MFLDFHESINENVSFGCDYKIPVKGKGSIPEEIGYVDKLYQLFLYNNSLSGSIPSKIFNLSSLTHLEVENNSLSGTIPSNTGYSLPSLQYLHLNDNNFVGNIPNNIFNSSNLIVFQLYDNAFSGTLPSIAFGNLGFVEFFLIYDNNLTIDDSHQFFTSLTNCRYLKYLDLSGNHIPNLPKSIGNISSEYIRAESCGIGGYIPLEVGNMSKLLFFDLYDNNINGPIPRSVKGLQKLQHLSLSKNGLQGSFIEEFCEMKSLGELYLNNNKLSGVLPTCLGNMISLIRIHVGSNSLNSRVPSSLWSLRDILEINFSSNSLIGNLPPEIGNLRAIILLDLSRNQISSNIPTTINSLLTLQKLSLADNKLNGSIPKSFGQMVSLISLDLSQNMLTGVIPKSLESLLYLENINFSYNRLQGEIPDGGHFKNFTAQSFMHNEALCGDPRLQVPTCGKQVKKWSMEKKLIFKCILPIVVSVILVVACIILLKHNKRKKNETTLERGLSTLGAPRRISYYELVQATNGFNESNFLGRGGFGSVYQGKLPDGEMIAVKVIDLQSEAKSKSFDAECNAMRNLRHRNLVKIISSCSNLDFKSLVMEFMSNGSVDKWLYSNNYCLNFLQRLNIMIDVASAVEYLHHGSSIPVVHCDLKPSNVLLDENMVAHVSDFGIAKLMDEGQSKTHTQTLATVGYLAPEYGSKGIVSVKGDVYSYGIMLMEIFTRRKPTDDMFVAELSLKTWISGSLPNSIMEVMDSNLVQITGDQIDDILTHMSYIFSLALNCCEESPDARINMADVIATLIKIKTLVVGANTV* 806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g1864 805 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 26 798 - -
Mtr8g1864 805 Gene3D Ribonuclease Inhibitor 152 456 IPR032675 -
Mtr8g1864 805 Gene3D Ribonuclease Inhibitor 22 151 IPR032675 -
Mtr8g1864 805 SUPERFAMILY L domain-like 192 441 - -
Mtr8g1864 805 SUPERFAMILY L domain-like 27 246 - -
Mtr8g1864 805 SMART LRR_typ_2 256 279 IPR003591 -
Mtr8g1864 805 SMART LRR_typ_2 280 304 IPR003591 -
Mtr8g1864 805 SMART LRR_typ_2 159 185 IPR003591 -
Mtr8g1864 805 SMART LRR_typ_2 328 352 IPR003591 -
Mtr8g1864 805 SMART LRR_typ_2 60 84 IPR003591 -
Mtr8g1864 805 SMART LRR_typ_2 85 109 IPR003591 -
Mtr8g1864 805 SMART LRR_typ_2 376 399 IPR003591 -
Mtr8g1864 805 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 26 798 - -
Mtr8g1864 805 ProSiteProfiles Protein kinase domain profile. 520 799 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr8g1864 805 SUPERFAMILY Protein kinase-like (PK-like) 500 792 IPR011009 -
Mtr8g1864 805 ProSitePatterns Protein kinases ATP-binding region signature. 526 548 IPR017441 GO:0005524
Mtr8g1864 805 Gene3D Phosphorylase Kinase; domain 1 503 595 - -
Mtr8g1864 805 SMART serkin_6 520 799 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr8g1864 805 ProSiteProfiles Leucine-rich repeat profile. 164 185 IPR001611 GO:0005515
Mtr8g1864 805 Gene3D Transferase(Phosphotransferase) domain 1 596 800 - -
Mtr8g1864 805 Pfam Leucine rich repeat 38 98 IPR001611 GO:0005515
Mtr8g1864 805 Pfam Leucine rich repeat 354 413 IPR001611 GO:0005515
Mtr8g1864 805 ProSitePatterns Serine/Threonine protein kinases active-site signature. 639 651 IPR008271 GO:0004672|GO:0006468
Mtr8g1864 805 Pfam Protein kinase domain 521 789 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g1864 Mtr-Chr8 28306286 28311312 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g1864 26 796 Receptor kinase-like Gene Family AT3G47570 37.609 8.48e-167 507
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Mtr8g1864 Pkinase 8.2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g1864 - K13420 mtr:MTR_8g469650 1216.45