Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g1858 ATGACCAACTTGCTATATTTTTCTCTTTCTGGGAATAATATAACTGGACCAATACCTGGTACATTCAAAGAGTTGCAGAAACTTCAGCATTTGAGTCTTAGCAACAATGGATTACAAGGACCATTTATTGAAGAGCTTTGTGAAATGAAGAGTTTGGGTGAGTTGTATCTAAACAATAATAAGCTCTCTGGAGTTTTACCAACATGTTTGGGAAATATGACTTCTATTATAAGGTTATACATTGGATCTAACAATCTGAACTCTAAGATACCTTCCTCTCTTTGGAGTGTCATAGATATCTTAGAGGTAGATTTGTCCTCTAATGCCTTCATTGGTAATCTTCCACCTGAGATTGGGAATTTGAGAGCAATTATACTTTTAGACCTATCAAGAAATCAGATTTCAAGCAACATTCCAACAACCTTCAGTTCCTTACAAACATTGCAGAAGCTCTCCTTGGCAGATAATAAACTAAATGGATCAATTCCGAAATCACTTGGTGAAATGGTAAGTTTAATCTCTTTGGACTTGTCCCAAAATATGTTAACTGGTGTTATTCCAAAATCCTTAGAATCACTTGTGTATCTTCAAAACATCAACTTCTCATATAATAGATTACAAGGAGAGATTCCTAATGGTGGACGGTTCAAAAATTTCACAGCTCAATCATTTATGCATAATGATGCACTTTGCGGTGATCCTCGCCTTCAGGTACCTACATGTGGTAAGCAAGTTAAGAAATGGTCAAATGAAAAGAAGCTTATATTGAAATGCATACTTCCCATAGTTGTGTCAGCCATTTTGGTTGTTGCGTGCATCATACTTTTAAAACATAATAAAAGGAGAAAGAATGAAAATAATGTTGGAAGGGGTTTGTCAACTTTGGGAGCTCCAAGAAGAATATCCTATTATGAACTTGTGCAAGCAACTAATGGATTCAATGAGAGTAATTTCCTTGGAAGGGGGGGATTTGGCTCTGTTTATCAGGGGAAGCTTCTTGGTGGTGAGATGATTGCCGTTAAAGTAATTGATTTGCAATCAGAAGCAAAATCAAAGAGCTTTGATGCAGAATGCAATGCGATGAGAAATCTACGACATCGGAATCTGGTAAAGATTATCAGTAGTTGCTCAAATCTTGATTTCAAATCATTGGTGATGGAGTTCATGTCAAATGGAAGTGTAGACAAATGGTTATATTCAAATAACTATTGTCTAAATTTCTTGCAAAGGTTAAATATAATGATAGATGTTGCATCTGCATTGGAATATCTCCATCATGGTTCTTCAATGCCTGTGGTTCATTGTGATCTAAAGCCTTCCAATGTCTTGTTGGATGAAAATATGGTTGCACATGTTAGTGATTTTGGTATTGCAAAGCTCATGGATGAAGGACAATCTCAAACTCATACACAAACTTTGGCTACTGTTGGATACATCGCACCAGAGTATGGATCTAAAGGAATTGTTTCCGTCAAAGGAGATGTGTACAGCTATGGGATCATGTTAATGGAAATCTTCACAAGAAGAAAGCCAACAGATGATATGTTTGTTGCAGAACTAAGCTTGAAGACATGGATCAGTGGATCATTGCCTAATTCAATCATGGAGGTCATGGATTCAAATTTAGTCCAAATAACTGGGGACCAAATTGATGATATATTGACTCACATGTCATATATTTTTAGTTTAGCATTGAATTGCTGTGAAGAATCACCTGATGCAAGAATCAATATGGCAGATGTTATTGCGACGCTAATCAAAATCAAGACTTTGGTTGTTGGTGCAAACACAGTCTAG 1797 0.3628 MTNLLYFSLSGNNITGPIPGTFKELQKLQHLSLSNNGLQGPFIEELCEMKSLGELYLNNNKLSGVLPTCLGNMTSIIRLYIGSNNLNSKIPSSLWSVIDILEVDLSSNAFIGNLPPEIGNLRAIILLDLSRNQISSNIPTTFSSLQTLQKLSLADNKLNGSIPKSLGEMVSLISLDLSQNMLTGVIPKSLESLVYLQNINFSYNRLQGEIPNGGRFKNFTAQSFMHNDALCGDPRLQVPTCGKQVKKWSNEKKLILKCILPIVVSAILVVACIILLKHNKRRKNENNVGRGLSTLGAPRRISYYELVQATNGFNESNFLGRGGFGSVYQGKLLGGEMIAVKVIDLQSEAKSKSFDAECNAMRNLRHRNLVKIISSCSNLDFKSLVMEFMSNGSVDKWLYSNNYCLNFLQRLNIMIDVASALEYLHHGSSMPVVHCDLKPSNVLLDENMVAHVSDFGIAKLMDEGQSQTHTQTLATVGYIAPEYGSKGIVSVKGDVYSYGIMLMEIFTRRKPTDDMFVAELSLKTWISGSLPNSIMEVMDSNLVQITGDQIDDILTHMSYIFSLALNCCEESPDARINMADVIATLIKIKTLVVGANTV* 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g1858 598 ProSitePatterns Serine/Threonine protein kinases active-site signature. 432 444 IPR008271 GO:0004672|GO:0006468
Mtr8g1858 598 Gene3D Ribonuclease Inhibitor 1 249 IPR032675 -
Mtr8g1858 598 SMART serkin_6 313 592 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr8g1858 598 SMART LRR_typ_2 73 97 IPR003591 -
Mtr8g1858 598 SMART LRR_typ_2 1 24 IPR003591 -
Mtr8g1858 598 SMART LRR_typ_2 49 72 IPR003591 -
Mtr8g1858 598 SMART LRR_typ_2 169 192 IPR003591 -
Mtr8g1858 598 SMART LRR_typ_2 121 144 IPR003591 -
Mtr8g1858 598 Gene3D Phosphorylase Kinase; domain 1 296 388 - -
Mtr8g1858 598 SUPERFAMILY Protein kinase-like (PK-like) 292 586 IPR011009 -
Mtr8g1858 598 Gene3D Transferase(Phosphotransferase) domain 1 389 593 - -
Mtr8g1858 598 SUPERFAMILY L domain-like 1 234 - -
Mtr8g1858 598 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 2 591 - -
Mtr8g1858 598 Pfam Leucine rich repeat 147 206 IPR001611 GO:0005515
Mtr8g1858 598 Pfam Leucine rich repeat 1 38 IPR001611 GO:0005515
Mtr8g1858 598 ProSitePatterns Protein kinases ATP-binding region signature. 319 341 IPR017441 GO:0005524
Mtr8g1858 598 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 2 591 - -
Mtr8g1858 598 Pfam Protein kinase domain 314 582 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr8g1858 598 ProSiteProfiles Protein kinase domain profile. 313 592 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g1858 Mtr-Chr8 28146068 28148806 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g1858 1 589 Receptor kinase-like Gene Family AT3G47570 38.636 1.89e-135 418
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Mtr8g1858 Pkinase 6e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g1858 - K13420 mtr:MTR_0070s0020 1070.84