Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g1855 ATGATTTCTCTTATAAGGATACATGTAGGATCTAACAGTTTGAACTCTAGAATACCTTTATCTCTTTGGAGTCTTAGAGATATATTAGAGATAAATTTTTCTTCAAATTCTTTAATTGGTAATCTTCCACCTGAGATTGGGAATTTGAGAGCAATTATACTTTTAGATCTATCAAGAAATCAGATTTCAAGCAACATTCCAACAACCATTAATTCCTTATTAACATTGCAGAATCTCTCCTTAGCAGATAATAAACTGAATGGTTCAATTCCCAAATCACTTGGTGAAATGGTAAGTTTAATCTCTTTGGACTTGTCCCAAAATATGTTAACCGGTGTTATTCCAAAATCCTTAGAATCACTTTTGTATCTTCAAAACATCAACTTCTCATATAATAGATTACAAGGAGAGATTCCTGATGGTGGACATTTCAAAAACTTCACAGCTCAATCATTTATGCATAATGAAGCACTTTGCGGCGATCCTCACCTCGAAGTACCTACATGTGCTAAGCATGTTAAGAAATGGTCAATGGAAAAAAAACTTATATTGAAATGCATACTTCCCATAGTTATGTCAGCCATTTTGGTTGTTGCGTGCATCATACTTTTAAAACATAATAAAAGGAGAAAGAATGAAAATACTCTTGAAAGGGGTTTGTCAATTTTGGGAGCTCCAAGGAGAATATCCTATTATGAACTCGTGCAAGCAACTAATGGATTCAATGAGAGTAATTTCCTTGGAAGTGGGGGATTTGGCTCTGTTTATCAGGGGAAGCTTCTTGATGGTGAGATGATTGCCGTTAAAGTAATTGATTTGGAATCAGAGGCAAAATCAAAGAGCTTTGATGCGGAATGCAATGCGATGAGAAATCTGCGACATCGAAATTTGGTAAAGATTATCAGCAGTTGCTCAAATCTTGATTTCAAATCATTGGTGATGGAGTTCATGTCAAATGGAAGTGTAGACAGTTGGTTATATTCAAATAACTATTGTCTAAGTTTCTTGCAAAGGTTAAATATAATGATAGATGTTGCATCTGCATTGGAATATCTTCATCATGGTTCTTCAATGCCTGTGGTTCATTGTGATCTAAAGCCTTCCAATGTCTTGTTGGATGAAAATATGGTTGCACGTGTTAGTGATTTTGGTATTGCTAAGCTCATGGATGAAGGTCAATCTAAAACTCATACACAGACTTTAGCTACTGTTGGATACCTTGCACCAGAGTATGGATCTAAGGGAATTGTTTCTGTCAAAGGAGACGTGTACAGCTATGGGATTATGCTAATGGAGATCTTCACAAGAAAAAAGCCAACAGATGATATGTTTGTTGCAGAACTAAGCTTGAAGACATGGATCAGTGGATCATTGCCTAATTCAATTATGGAGGTCTTGGATTCAAATTTAGTCCAAATAACTGGGGACCAAATTGATGATATATTGACTCACATGTCATCTATTTTTAGTTTAGCCCTGAATTGTTGTGAAGATTCACCTGAAGCAAGAATCAATATGGCAGATGTTATTGCGACGCTAAACAAAATCAAGACTTTGGTTGTTGGCGCAAACACAGTCTAG 1581 0.3574 MISLIRIHVGSNSLNSRIPLSLWSLRDILEINFSSNSLIGNLPPEIGNLRAIILLDLSRNQISSNIPTTINSLLTLQNLSLADNKLNGSIPKSLGEMVSLISLDLSQNMLTGVIPKSLESLLYLQNINFSYNRLQGEIPDGGHFKNFTAQSFMHNEALCGDPHLEVPTCAKHVKKWSMEKKLILKCILPIVMSAILVVACIILLKHNKRRKNENTLERGLSILGAPRRISYYELVQATNGFNESNFLGSGGFGSVYQGKLLDGEMIAVKVIDLESEAKSKSFDAECNAMRNLRHRNLVKIISSCSNLDFKSLVMEFMSNGSVDSWLYSNNYCLSFLQRLNIMIDVASALEYLHHGSSMPVVHCDLKPSNVLLDENMVARVSDFGIAKLMDEGQSKTHTQTLATVGYLAPEYGSKGIVSVKGDVYSYGIMLMEIFTRKKPTDDMFVAELSLKTWISGSLPNSIMEVLDSNLVQITGDQIDDILTHMSSIFSLALNCCEDSPEARINMADVIATLNKIKTLVVGANTV* 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g1855 526 Gene3D Phosphorylase Kinase; domain 1 224 316 - -
Mtr8g1855 526 ProSitePatterns Protein kinases ATP-binding region signature. 247 269 IPR017441 GO:0005524
Mtr8g1855 526 SMART serkin_6 241 520 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr8g1855 526 ProSitePatterns Serine/Threonine protein kinases active-site signature. 360 372 IPR008271 GO:0004672|GO:0006468
Mtr8g1855 526 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 3 520 - -
Mtr8g1855 526 Pfam Protein kinase domain 242 510 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr8g1855 526 ProSiteProfiles Protein kinase domain profile. 241 520 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr8g1855 526 SUPERFAMILY L domain-like 3 163 - -
Mtr8g1855 526 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 3 520 - -
Mtr8g1855 526 SUPERFAMILY Protein kinase-like (PK-like) 221 513 IPR011009 -
Mtr8g1855 526 Gene3D Transferase(Phosphotransferase) domain 1 317 522 - -
Mtr8g1855 526 Gene3D Ribonuclease Inhibitor 1 176 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g1855 Mtr-Chr8 28087809 28089810 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g1855 4 517 Receptor kinase-like Gene Family AT3G47570 38.674 1.17e-119 374
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Mtr8g1855 Pkinase 1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g1855 - K13420 mtr:MTR_0070s0020 942.569