Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g1842 ATGGTGAATCTATCATCTTGCCTCTTACTTTTTTTGCTATCATTGCATTGTTTTGTGGCTAGCTTAGCTACGTATACAAAAAACATCACAACAGATCAATATGCTCTCCTAGCATTCAAATCACTAATTACTTCAGACCCCTATGATATTTTGTCTAATAATTGGTCAACTACATCTTATGTATGTAGTTGGGTTGGTGTCACTTGTGATGAGCGACACAATAGAGTCAACAGTTTGAAAATATCAAACATGAGACTTGGAGGCACTATTTCTCCAAACCTGGGGAATTTGTCGTTCCTTGTTATACTTAACCTCTCCCACAATAGTTTCAGTGGTCAGTTTCCTAAAGAGATATATCGGTTGCATCGATTGAAGGTTATTTCTATCTCCTTTAATGAGTTTGAAGGAGGAATTCCTGAAGTGTTGGGGGACTTATCACGACTTCAAATTTTGAAACTTGGCGCTAACAATTTTAGTGGTTTTCCTCCCCAATCTATTGGTAATCTTCGCCAGTTAAAAAGTTTGGATATTAGTCAGAACATGTTGTCTGGACCCATACCTCAAACAATTTCAAACATGTCTTCACTTGAATATCTTGGTTTACAGTATAACTACTTTTCAGGTACGATTCCCAAGGAGATTGGTTATCTTGATAAACTTGAGCGACTATTATTGTTTAACAATAGGTTAAGTGGATCTATTCCTTCCAAAATCTTGAACATGTCATCACTCACTGCTTTAGTGGTTGATCATAATAGTCTCTCAGGCCCACTTCCATCAAATACGGGATATAGCCTTCCTAGTTTGCAATATCTATACTTGAATGAAAACAATTTTGTTGGAAATATTCCAAATAACATATTCAACTCTTCTAATCTGATTGATTTTCAATTGTATGACAACGCATTCAGTGGAACTCTACCCAATATTGCTTTTGGAAATTTAAGATTCCTTGAATTCTTTCTCATATATGACAACAATTTGACAATAGATGATTCTCATCAATTCTTTACTTCCTTGACAAATTGTAGATATTTGAAGTATCTAGACTTATCAGGTAATCATATACCCAATCTTCCTAAGTCAATTGGAAACATAACTTCAGAATACATCAGGGCAGAATCATGTGGAATTGGTGGTTATATTCCCCTAGAAGTTGGAAACATGAGCAACTTGCTATTTTTTGATATGTATGACAATAATATAAATGGACCAATACCTCGTTCAGTCAAAGGGTTACAGAAACTTCAACATTTGAGTCTTAGCAAGAATGGACTACAAGGATCATTTATTGAAGAGTTTTGTGAAATGAAGAGTTTGGGTGAGTTGTATCTAAACAATAACAAGCTCTCTGGAGTTTTACCAACATGTTTGGGAAATATGAGTTCTATTATAAGGTTATACATAGGATCTAACAGTCTGAACTCTAAGATACCTTCCTCTCTTTGGAGTGTCATAGATATCTTACAGGTAGATTTGTCCTCTAATGCGTTCATCGGTAATCTGCCACCTGAGATTGGGAATTTGAGAGCAATTATACTATTAGACCTATCAAGAAATCAGATTTCAAGCAACATTCCAACAACCATCAGTCCCTTACAAACATTGCAGAAGCTCTCCTTAGCAGATAATAAACTGAATGGATCAATTCCTGAATCACTTGGTCAAATGATAAGCTTGATCTCTTTGGACTTGTCCCAAAATATGTTAACTGGTGCTATTCCAAAATCCTTAGAATCACTTGTGTATCTCCAAAACATCAACTTCTCATATAATAGATTACAAGGAGAGATTCCTGATGATGGACATTTCAAAAATTTCACAGCTCAATCATTTATGCATAATGATGCACTTTGCGGAGATCCTCACTTCCAAGTACCTACATGTAGTAAGCAAGTTAAGAAATGGTCAATGGAAAAAAAGCTTATATTGAAATACATACTTCCCATAGTTGTGTCAGCCATTTTGGTTGTTGCTTGCATCATAGTTTTAAAACATAATAAAACGAGAAAGAATGAAAATACTCTTGGAAGGGGTTTGTCAACTTTGGGAGCTCCAAGAAGAATATCATATTATGAACTTGTGCAAGCAACAAATGGATTCAATGAGAGTAATTTCCTTGGAAGGGGAGCATTTGGATCTGTTTATCAGGGCAAGCTTCTTGATGGTGAAATGATTGCCGTTAAAGTAATTGATTTGCAATCAGAGGCAAAATCAAAGAGCTTTGATGCAGAATGCAATGCGATGAGAAATCTACGACATCGGAATTTGGTAAAGATTATCAGCAGTTGCTCAAATCTTGATTTCAAATCATTGGTGATGGAGTTCATGTCAAATGGAAGTGTAGAAAAATGGTTATATTCAAATAACTATTGTCTAAATTTCTTACAAAGGTTAAATATAATGATAGATGTTGCATCTGCATTGGAATATCTTCATCATGGTTCTTCAATACCTGTGGTTCATTGCGATCTAAAGCCTTCCAATGTCTTGTTGGATGAAAATATGGTGGCACATGTTAGCGATTTTGGTATTGCCAAGCTCATGGATGAAGGACAATCTCAAACTCATACACAAACTTTGGCTACTATTGGATATCTTGCACCAGAGTATGGTTCTAGAGGAATTGTTTCTGTCAAAGGAGATGTGTACAGCTATGGAATTATGCTAATGGAAATCTTTACAAAGAGAAAGCCAATAGATGATATGTTTGTTGCAGAACTAAGCTTGAAGACATGGATCAGTCGATCATTGCCTAATTCCATTATGGAGGTCATGGATTCAAATTTAGTCCAAATAACTGGGGACGAAATTGATGATATATTGACTCACATGTCATCTATTTTTAGTTTAGCTCTGAGTTGTTGTGAAGATTCACCTGAAGCAAGAATCAATATGGCAGAAGTTATTGCTTCACTAATCAAAATCAAGACTTTGGTTGTTGGCGCAAACGCAGTCTAG 2961 0.3556 MVNLSSCLLLFLLSLHCFVASLATYTKNITTDQYALLAFKSLITSDPYDILSNNWSTTSYVCSWVGVTCDERHNRVNSLKISNMRLGGTISPNLGNLSFLVILNLSHNSFSGQFPKEIYRLHRLKVISISFNEFEGGIPEVLGDLSRLQILKLGANNFSGFPPQSIGNLRQLKSLDISQNMLSGPIPQTISNMSSLEYLGLQYNYFSGTIPKEIGYLDKLERLLLFNNRLSGSIPSKILNMSSLTALVVDHNSLSGPLPSNTGYSLPSLQYLYLNENNFVGNIPNNIFNSSNLIDFQLYDNAFSGTLPNIAFGNLRFLEFFLIYDNNLTIDDSHQFFTSLTNCRYLKYLDLSGNHIPNLPKSIGNITSEYIRAESCGIGGYIPLEVGNMSNLLFFDMYDNNINGPIPRSVKGLQKLQHLSLSKNGLQGSFIEEFCEMKSLGELYLNNNKLSGVLPTCLGNMSSIIRLYIGSNSLNSKIPSSLWSVIDILQVDLSSNAFIGNLPPEIGNLRAIILLDLSRNQISSNIPTTISPLQTLQKLSLADNKLNGSIPESLGQMISLISLDLSQNMLTGAIPKSLESLVYLQNINFSYNRLQGEIPDDGHFKNFTAQSFMHNDALCGDPHFQVPTCSKQVKKWSMEKKLILKYILPIVVSAILVVACIIVLKHNKTRKNENTLGRGLSTLGAPRRISYYELVQATNGFNESNFLGRGAFGSVYQGKLLDGEMIAVKVIDLQSEAKSKSFDAECNAMRNLRHRNLVKIISSCSNLDFKSLVMEFMSNGSVEKWLYSNNYCLNFLQRLNIMIDVASALEYLHHGSSIPVVHCDLKPSNVLLDENMVAHVSDFGIAKLMDEGQSQTHTQTLATIGYLAPEYGSRGIVSVKGDVYSYGIMLMEIFTKRKPIDDMFVAELSLKTWISRSLPNSIMEVMDSNLVQITGDEIDDILTHMSSIFSLALSCCEDSPEARINMAEVIASLIKIKTLVVGANAV* 987
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g1842 986 Pfam Leucine rich repeat 535 594 IPR001611 GO:0005515
Mtr8g1842 986 Pfam Leucine rich repeat 146 205 IPR001611 GO:0005515
Mtr8g1842 986 Pfam Leucine rich repeat N-terminal domain 31 70 IPR013210 -
Mtr8g1842 986 ProSiteProfiles Protein kinase domain profile. 701 980 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr8g1842 986 Gene3D Transferase(Phosphotransferase) domain 1 777 981 - -
Mtr8g1842 986 Gene3D Ribonuclease Inhibitor 29 312 IPR032675 -
Mtr8g1842 986 SMART LRR_sd22_2 533 556 - -
Mtr8g1842 986 SMART LRR_sd22_2 413 436 - -
Mtr8g1842 986 SMART LRR_sd22_2 437 463 - -
Mtr8g1842 986 SMART LRR_sd22_2 169 195 - -
Mtr8g1842 986 SMART LRR_sd22_2 217 243 - -
Mtr8g1842 986 SMART LRR_sd22_2 340 368 - -
Mtr8g1842 986 ProSitePatterns Serine/Threonine protein kinases active-site signature. 820 832 IPR008271 GO:0004672|GO:0006468
Mtr8g1842 986 SUPERFAMILY Protein kinase-like (PK-like) 681 973 IPR011009 -
Mtr8g1842 986 Gene3D Phosphorylase Kinase; domain 1 684 776 - -
Mtr8g1842 986 Pfam Protein kinase domain 702 970 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr8g1842 986 SMART LRR_typ_2 217 241 IPR003591 -
Mtr8g1842 986 SMART LRR_typ_2 145 168 IPR003591 -
Mtr8g1842 986 SMART LRR_typ_2 340 366 IPR003591 -
Mtr8g1842 986 SMART LRR_typ_2 533 557 IPR003591 -
Mtr8g1842 986 SMART LRR_typ_2 169 193 IPR003591 -
Mtr8g1842 986 SMART LRR_typ_2 509 532 IPR003591 -
Mtr8g1842 986 SMART LRR_typ_2 266 290 IPR003591 -
Mtr8g1842 986 SMART LRR_typ_2 437 460 IPR003591 -
Mtr8g1842 986 SMART LRR_typ_2 97 121 IPR003591 -
Mtr8g1842 986 ProSitePatterns Protein kinases ATP-binding region signature. 707 729 IPR017441 GO:0005524
Mtr8g1842 986 SMART serkin_6 701 980 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr8g1842 986 ProSiteProfiles Leucine-rich repeat profile. 345 366 IPR001611 GO:0005515
Mtr8g1842 986 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR ISOFORM X1 180 980 - -
Mtr8g1842 986 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR ISOFORM X1 9 147 - -
Mtr8g1842 986 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR ISOFORM X1 147 211 - -
Mtr8g1842 986 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR ISOFORM X1 127 188 - -
Mtr8g1842 986 Gene3D Ribonuclease Inhibitor 330 637 IPR032675 -
Mtr8g1842 986 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 127 188 - -
Mtr8g1842 986 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 9 147 - -
Mtr8g1842 986 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 180 980 - -
Mtr8g1842 986 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 147 211 - -
Mtr8g1842 986 SUPERFAMILY L domain-like 373 623 - -
Mtr8g1842 986 SUPERFAMILY L domain-like 31 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g1842 Mtr-Chr8 27793651 27825178 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g1842 22 977 Receptor kinase-like Gene Family AT3G47570 37.652 0.0 635
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Mtr8g1842 Pkinase 8.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g1842 - - mtr:MTR_8g465340 1241.48