Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g1839 ATGGTGAATGTATTATCTCGTCTCTTACTTTTTTTGATATCATTGCATTGTTTTGTGGCTTGCTTAGCTACCAATACAAAAAACATCACAACTGATCAATCTTCACTTTTAGCATTCAAATCACTAATTACTTCAGACCCCTATGATATGTTGTCTAATAATTGGTCAACATCCTCTCATGTATGCACTTGGGTTGGTGTCACTTGTGATGAGCGACACAACAGAGTCCATAGTTTGAATCTCCATAACATGAGTCTTAGAGGTATTGTTTCCCCAAACCTGGGGAATTTGTCGTTCCTTGTTATACTTAACCTCTCCAGCAATAGCTTCAATGGTCAGTTTTCTAAAGAGATATATTGGTTGCATCGATTGAAGGTTATTTCTATCGCCTATAATGAGTTTGTTGGAGGAATTCCTGAAGCGTTGGGGGACTTATCACAACTTCAAATTTTATATCTTGGCGCTAACAATTTTAGCGGTTTTCTTCCCCAATCGATTGGTAATCTTCGCCAGTTAAAAAGATTTGATATTAGTCGGAACATGTTGTCTGGACCCATACCTCAAACAATTTCAAACATGTCTTCACTTGAATATCTTGCTTTACAACTTAACTACTTTTCAGGTGAAATTCTATTGTTTAACAACATGACTTCTTTGAGGGTGGTCTACTTTGAAGCTAACAATTTAAATGGAAGACTACCAAATGAGTTTTTCAATCAGCTTCCTCAACTCGAAGATTTTACTTTAAGGAACAATCAATTTGAAGGAAGCATTCCACGATCAATTGGTAACTGCACATCGTTGATATACATAAATTTAGCATCAAACTTTTTGACAGGTACGATTCCCGAGGAGATTGGCTATCTTGATAAACTTGAGCGACTATTCTTGTCTAACAATAGCTTAAGTGGATCTATTCCTTCCAAAATCTTCAACTTGTCATCACTCACTTATTTGGAGGTTGAAGAGAATAGCCTCTCAGGCACAATTCCATCAAATACGGGATATAGCCTTCCTAGCCTGCAACATCTACACTTGAATAATAACAATTTTGTTGGAAATATTCCAAATAACATATTCAACTCTTCTAATCTTATTCATTTTCAATTGACTGACAACGAATTCAGTGGAACTTTACCCAATACTGCTTTTGGAGATTTAGGATTGCTTGAATCGTTTAACATAGATACCAACAATTTGACAATTGAAGATTCTCATCAATTCTTTACTTCCTTGACAAATTGTAGATATTTGAAATATTTAGAGCTATCAGGTAATCATATACCCAATCTTCCAAAGTCAATTGGAAACATAACTTCAGAATTCTTCTGGGCAAAATCATGTGGAATTGAGGGTAATATTCCCGTAGAAGTTGGAAACATGAGCAATTTGCTATTACTTTCTCTGTATGACAATAATATAAATGGACCAATACCTCGTTCACTCAAAGGGCTAGAGAAGCTTCAAGTATTGTCTCTTGCTTACAATGCACTCAAAGGATCATTCATTGATGAGCTCTGTCTAATTAAGAGTTTAGGTGAGTTGTATCTAGAAAATAATAAGCTTTCTGGTGTTTTACCAACATGTTTGGGAAATATGACTTCTCTTAGAATATTGAACGTAGGATCTAACAATTTGAACTCTAAGATACCTTCATCTCTTTGGGGTCTCACTGATATATTAATGTTAGATTTGTCCTCCAATGCTTTTATTGGTGATTTTCCACCCGATATTGGGAATTTGATAGAACTTGTAATATTAGATCTATCAAGAAATCAAATTTCAAGCAACATTCCTACAACCATCAGTTCCTTACAAAATTTGCAGAATCTCTCCTTAGCTCATAATAAATTGAATGGGTCAATTCCCGCATCACTGAATGGAATGGTAAGCTTGATCTCTTTGGACTTGTCTCAAAATATGTTAACCGGTGTTATTCCAAAATCCTTAGAATCACTTTTGTACCTTCAAAACATCAACTTCTCATATAATAGATTACAAGGAGAGATTCCTAATGGTGGACATTTCAAAAATTTCACAGCTCAATCATTTATGCATAATGAAGCACTTTGCGGTGATCCTCGCCTTCAAGTACCTACATGTGGTGAGCAAGTTAAGAAATGGTCCATGGAAAAAAAGCTTATATTGAAATGCATACTTCCCATAGTTGTGTCAGCCATTTTGGTTGTTGCGTGCATCATACTTTTAAAGCATAATAAAAGGAAAAAGAACGAAACTTCTCTTGAAAGGGGTTTGTCAACTTTGGGAGCTCCAAGAAGAATATCGTATTATGAACTTGTGCAAGCAACTAATGGATTCAATGAGAGTAATTTCCTTGGAAGTGGGGGATTTGGATCTGTTTATCAGGGGAAGCTTCTTGATGGTGAGATGATTGCAGTTAAAGTAATTGATTTGCAATCAGAGGCAAAATCAAAGAGCTTTGATGTAGAATGCAATGCAATGAGAAATCTACGACATCGAAATCTGGTAAAGATTATCAGTAGTTGCTCAAATCTTGATTTCAAATCATTGGTGATGGAGTTCATGTCAAATGGAAGTGTAGACAAATGGTTATATTCAAATAACTATTGTCTAAATTTCTTGCAAAGGTTAAATATAATGATAGATGTTGCATCTGCATTGGAATATCTTCATCATGGTTCTTCAATGCCTGTGGTTCATTGTGATCTAAAGCCTTCCAATGTCTTGTTGGATGAAAATATGGTTGCACATGTTAGTGATTTTGGTATTGCTAAGCTCATGGATGAAGGACAATCTAAAACTCATACACAAACTTTGGCTACTGTTGGATACCTCGCACCAGAGTATGGATCTAAAGGAATTGTTTCTGTCAAAGGAGATGTGTACAGCTATGGGATTATGCTAATGGAAATCTTTACAAGGAGAAAACCAATAGATGATATGTTTGTTGCAGAACTAAGCTTGAAGACATGGATCAGTCGATCATTGCCTAATTCCATTATGGAGGTCATGGATTCAAATTTAGTCCAAATAACTGGGGACCAAATTGATTATATATTGACTCACATGTCATCTATTTTTAGTTTAGCCTTGAGTTGTTGTGAAGATTCACCTGAAGCAAGAATCAATATGGCAGATGTTATTGCGACACTAATCAAAATCAAGACTTTAGTTGCTGGCGCAAACACAGTCTAG 3177 0.3554 MVNVLSRLLLFLISLHCFVACLATNTKNITTDQSSLLAFKSLITSDPYDMLSNNWSTSSHVCTWVGVTCDERHNRVHSLNLHNMSLRGIVSPNLGNLSFLVILNLSSNSFNGQFSKEIYWLHRLKVISIAYNEFVGGIPEALGDLSQLQILYLGANNFSGFLPQSIGNLRQLKRFDISRNMLSGPIPQTISNMSSLEYLALQLNYFSGEILLFNNMTSLRVVYFEANNLNGRLPNEFFNQLPQLEDFTLRNNQFEGSIPRSIGNCTSLIYINLASNFLTGTIPEEIGYLDKLERLFLSNNSLSGSIPSKIFNLSSLTYLEVEENSLSGTIPSNTGYSLPSLQHLHLNNNNFVGNIPNNIFNSSNLIHFQLTDNEFSGTLPNTAFGDLGLLESFNIDTNNLTIEDSHQFFTSLTNCRYLKYLELSGNHIPNLPKSIGNITSEFFWAKSCGIEGNIPVEVGNMSNLLLLSLYDNNINGPIPRSLKGLEKLQVLSLAYNALKGSFIDELCLIKSLGELYLENNKLSGVLPTCLGNMTSLRILNVGSNNLNSKIPSSLWGLTDILMLDLSSNAFIGDFPPDIGNLIELVILDLSRNQISSNIPTTISSLQNLQNLSLAHNKLNGSIPASLNGMVSLISLDLSQNMLTGVIPKSLESLLYLQNINFSYNRLQGEIPNGGHFKNFTAQSFMHNEALCGDPRLQVPTCGEQVKKWSMEKKLILKCILPIVVSAILVVACIILLKHNKRKKNETSLERGLSTLGAPRRISYYELVQATNGFNESNFLGSGGFGSVYQGKLLDGEMIAVKVIDLQSEAKSKSFDVECNAMRNLRHRNLVKIISSCSNLDFKSLVMEFMSNGSVDKWLYSNNYCLNFLQRLNIMIDVASALEYLHHGSSMPVVHCDLKPSNVLLDENMVAHVSDFGIAKLMDEGQSKTHTQTLATVGYLAPEYGSKGIVSVKGDVYSYGIMLMEIFTRRKPIDDMFVAELSLKTWISRSLPNSIMEVMDSNLVQITGDQIDYILTHMSSIFSLALSCCEDSPEARINMADVIATLIKIKTLVAGANTV* 1059
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g1839 1058 Pfam Leucine rich repeat 291 351 IPR001611 GO:0005515
Mtr8g1839 1058 Pfam Leucine rich repeat 147 204 IPR001611 GO:0005515
Mtr8g1839 1058 Pfam Leucine rich repeat 583 642 IPR001611 GO:0005515
Mtr8g1839 1058 Pfam Leucine rich repeat 511 569 IPR001611 GO:0005515
Mtr8g1839 1058 ProSitePatterns Protein kinases ATP-binding region signature. 779 801 IPR017441 GO:0005524
Mtr8g1839 1058 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 144 283 - -
Mtr8g1839 1058 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 272 1051 - -
Mtr8g1839 1058 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 13 146 - -
Mtr8g1839 1058 Pfam Leucine rich repeat N-terminal domain 31 70 IPR013210 -
Mtr8g1839 1058 Gene3D Ribonuclease Inhibitor 186 237 IPR032675 -
Mtr8g1839 1058 SUPERFAMILY Protein kinase-like (PK-like) 752 1045 IPR011009 -
Mtr8g1839 1058 Gene3D Ribonuclease Inhibitor 338 709 IPR032675 -
Mtr8g1839 1058 SMART LRR_sd22_2 145 171 - -
Mtr8g1839 1058 SMART LRR_sd22_2 289 315 - -
Mtr8g1839 1058 SMART LRR_sd22_2 581 600 - -
Mtr8g1839 1058 SMART LRR_sd22_2 605 628 - -
Mtr8g1839 1058 SMART LRR_sd22_2 412 440 - -
Mtr8g1839 1058 SMART LRR_sd22_2 629 650 - -
Mtr8g1839 1058 SMART LRR_sd22_2 461 487 - -
Mtr8g1839 1058 Gene3D Phosphorylase Kinase; domain 1 756 848 - -
Mtr8g1839 1058 Pfam Protein kinase domain 774 1042 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr8g1839 1058 SMART serkin_6 773 1052 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr8g1839 1058 SUPERFAMILY L domain-like 55 308 - -
Mtr8g1839 1058 Gene3D Transferase(Phosphotransferase) domain 1 849 1055 - -
Mtr8g1839 1058 SUPERFAMILY L domain-like 447 694 - -
Mtr8g1839 1058 ProSiteProfiles Protein kinase domain profile. 773 1052 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr8g1839 1058 Gene3D Ribonuclease Inhibitor 29 185 IPR032675 -
Mtr8g1839 1058 Gene3D Ribonuclease Inhibitor 238 337 IPR032675 -
Mtr8g1839 1058 SMART LRR_typ_2 581 604 IPR003591 -
Mtr8g1839 1058 SMART LRR_typ_2 338 362 IPR003591 -
Mtr8g1839 1058 SMART LRR_typ_2 289 313 IPR003591 -
Mtr8g1839 1058 SMART LRR_typ_2 605 628 IPR003591 -
Mtr8g1839 1058 SMART LRR_typ_2 412 438 IPR003591 -
Mtr8g1839 1058 SMART LRR_typ_2 629 652 IPR003591 -
Mtr8g1839 1058 SMART LRR_typ_2 145 168 IPR003591 -
Mtr8g1839 1058 SMART LRR_typ_2 241 265 IPR003591 -
Mtr8g1839 1058 SMART LRR_typ_2 533 557 IPR003591 -
Mtr8g1839 1058 SMART LRR_typ_2 509 532 IPR003591 -
Mtr8g1839 1058 SMART LRR_typ_2 216 240 IPR003591 -
Mtr8g1839 1058 ProSitePatterns Serine/Threonine protein kinases active-site signature. 892 904 IPR008271 GO:0004672|GO:0006468
Mtr8g1839 1058 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 272 1051 - -
Mtr8g1839 1058 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 144 283 - -
Mtr8g1839 1058 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 13 146 - -
Mtr8g1839 1058 SUPERFAMILY RNI-like 272 437 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g1839 Mtr-Chr8 27700238 27712443 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g1839 528 672 Receptor kinase-like Gene Family AT3G47570 34.483 1.71e-15 79.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Mtr8g1839 Pkinase 2.9e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g1839 - K13420 mtr:MTR_8g465340 1442.94