Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g1838 ATGGTGAATATATTATCTTGTCTCTTACTTTTTTTGTTATCATTGCATTGTTTTGTAGCTTGCTTAGCTTCGAATACAAAAAACAGCACAACTGATCAATCCGCTCTTATAGCATTCAAATCTTTAATTACTTCAGACCCCTATGATATGTTGGCTAATAATTGGTCAACCTCCTCTTCTGTGTGCAGTTGGGTTGGTGTCACTTGTGATGAGCGTCACGGAAGAGTATATAGTTTGATTCTCCGAAACATGAGTCTTAGAGGTACTGTTTCCCCAAATTTAGGGAATATGTCCTTTCTTGTTATACTTGACCTCAAAAACAATAGTTTCGGTGGTCAATTTCCTCAAGAGTTATGTCGGTTGCGTCGATTAAAGGTTCTGAACGTCAGGTATAACAAGTTTGAAGGAGGAATCTCTGAAGCGTTGGGGAATTTATCGCAACTTCAATATTTGTATCTTGGCGCTAACAATTTTAGTGGTTTTATCCCTGAATCTATCGGTAGCCTTCATCAGTTGAAGTTATTGGAAATTAGTAAGAACAATTTGTCTGGACTCATACCTCAAATGGTTTCAAACATGTCTTCACTTGAATATCTAGATTTATCTTCCAACTACTTTTCAGATCTGATACCTGAGGAGATTGGCGATCTGCATCAACTTAAGTTTCTAGAATTGGGAAACAATAGCTTCAAAGGATCAATTCCTTCCAAACTCCTCAACATATCATCACTGACATACTTGCATCTTGAACAAAATTACCTCTCAGGCATAATTCCATCAAAAACAGGTTATAGCCTTCCTAAGCTACAACAACTTTCGTTGTATCAAAACAATTTTGTTGGAAATATTCCAAATATTATATTCAACGCTTCTGATCTCATTCTAGTTGACTTGAATTACAACGCCTTCACTGGAACTGTTCCTAATGTTTTTGAAAATTTAAGGTTCCTTGAATCTTTCCTTATAGTGGAAAACTATTTAACAATAGATGATTCACATCAGTTCTTTAACTCCTTGACAAGTTGTAGATATTTGAAATATCTAGAGTTATCGGGGAATCATATCCGATCTCATATATTATCTAGTTTTCCAAATTCAATTGGAAACATATCTGCAGAATTCTTTTGGTTGGATTCATGTCGAATTGAAGGTAATATTCCCATAGAAATCGGAAACATGAGCAACATGATATTTTTTTCTATAAATGATAATAATATATATGGATCAATACCTGGTACTATCAAAGAGTTACAGAATCTTCAAGTGTTGGATCTTGGCAACAATCGACTACAAGGATCATTTATTGAGGAGCTTTGTGAACTTCAGAAATTAGGTGAGTTGTATCTAGAAAATAATAAGCTCTCTGGTGTTTTACCAACATGCTTGGAAAATATGACTTCTCTTAGAATGATAGACATAGGATCTAATAGTCTGAACTCTAAGATACCTTCCTCTCTTTGGAGTGTCATAGATATCTTAGAGGTAGATTTGTCTTATAATGCCTTCATTGGGAATCTTCCACCTGAGATTGGGAATTTGAGAGCAATTGTAGTTTTAGATCTATCAGGAAATAATATTTCAAGAAACATTCCTTCAACCATTAGTTCCTTAGTAACTTTGCAAAACCTATCATTAGCGCATAACAAACTGAATGGATCAATTCCATCATCACTTGGTGAAATGGTGAGCTTGACCTCCTTGGACTTGTCCCAAAATATGCTAACCGGTATTATTCCAAAATCCTTAGAATCACTTTTGTATCTTGAAAACATCAACTTCTCATATAATAGATTACAAGGAGAGATTCCTGATGGTGGGCCTTTCAAAAATTTTATGGCTGAATCTTTTATTCACAATGGAGCTCTTTGCGGAAATCCTCGCCTACATATACATCCGTGTGGTGAACAAGTTAAAAAATGGTCAATGGGAAAGAAGTTGTTATTCAAATGCATCATTCCCTTAGTTGTGTCAACCATTTTGGTTGTTGCATGCATCATACTTTTAAAGCATAATAAAAGGAAAAAGATTCAAAATACTCTTGAAAGGGGTTTATCAACTTTAGGAGCTCTAAGAAGAATTTCCTATTATGAACTTGTGCAAGCAACTAATGGATTCAATGAGTGTAATTTACTTGGACGGGGGGGCTTTGGCTCTGTATATCGGGGGAATCTCCGCAATGGAGAGATGATTGCAGTTAAAGTAATTGATTTGCAGTCAGAGGCAAAAGCAAAGAGCTTTGATGTAGAATGCAATGCAATGAGAAATCTCCGACATCGAAATCTTGTTAAGATTATTTGTAGTTGTTCAAATCTTGATTTTAAATCATTGGTGATGGAGTTCATGTCAAATGGAAGTGTGGACAAATGGTTATATTCAAATAATTGTTGTTTGAGTTTCTTGCAAAGGTTGAATATAATGATAGATGTTGCATCTGCATTGGTATATCTCCATCATGGTTCTTCAATATCTGTGGTTCATTGCGATCTAAAGCCTTCTAATGTCATGTTGGATAAAAATATGGTTGCACATGTTAGTGATTTTGGTATTGCCAAGCTCATCGATGAAGGCCGATCTAAATGCCATACACAAACTTTTCCTACTATTGGATACATTGCACCAGAGTATGGATCTAAAGGAATTGTTTCTGTGAAAGGAGATGTGTACAGCTATGGGATTATGCTAATGGAAATCTTTACAAGAAAAAAGCCAACAGATGATATGTTTGTTGCAGAACTAACTTTGAAGACATGGATCAGTGGATCATTGCCTAATTCAATTATTGATGTCATGGATTCAAATTTAGTCCAAATAACTGGGGACCAAATTGATGACATATTGACTTACATACCATCTATTTTTGGTTTAGCCCTCAGTTGTTGTGAAGATTTACCTAAAGCAAGAATTAATATGGCAGATGTTATTAAGTCGCTAATCAAAATCAAGACTTTGGTTCTTAGAGCAAACAGGGTATAG 2973 0.3518 MVNILSCLLLFLLSLHCFVACLASNTKNSTTDQSALIAFKSLITSDPYDMLANNWSTSSSVCSWVGVTCDERHGRVYSLILRNMSLRGTVSPNLGNMSFLVILDLKNNSFGGQFPQELCRLRRLKVLNVRYNKFEGGISEALGNLSQLQYLYLGANNFSGFIPESIGSLHQLKLLEISKNNLSGLIPQMVSNMSSLEYLDLSSNYFSDLIPEEIGDLHQLKFLELGNNSFKGSIPSKLLNISSLTYLHLEQNYLSGIIPSKTGYSLPKLQQLSLYQNNFVGNIPNIIFNASDLILVDLNYNAFTGTVPNVFENLRFLESFLIVENYLTIDDSHQFFNSLTSCRYLKYLELSGNHIRSHILSSFPNSIGNISAEFFWLDSCRIEGNIPIEIGNMSNMIFFSINDNNIYGSIPGTIKELQNLQVLDLGNNRLQGSFIEELCELQKLGELYLENNKLSGVLPTCLENMTSLRMIDIGSNSLNSKIPSSLWSVIDILEVDLSYNAFIGNLPPEIGNLRAIVVLDLSGNNISRNIPSTISSLVTLQNLSLAHNKLNGSIPSSLGEMVSLTSLDLSQNMLTGIIPKSLESLLYLENINFSYNRLQGEIPDGGPFKNFMAESFIHNGALCGNPRLHIHPCGEQVKKWSMGKKLLFKCIIPLVVSTILVVACIILLKHNKRKKIQNTLERGLSTLGALRRISYYELVQATNGFNECNLLGRGGFGSVYRGNLRNGEMIAVKVIDLQSEAKAKSFDVECNAMRNLRHRNLVKIICSCSNLDFKSLVMEFMSNGSVDKWLYSNNCCLSFLQRLNIMIDVASALVYLHHGSSISVVHCDLKPSNVMLDKNMVAHVSDFGIAKLIDEGRSKCHTQTFPTIGYIAPEYGSKGIVSVKGDVYSYGIMLMEIFTRKKPTDDMFVAELTLKTWISGSLPNSIIDVMDSNLVQITGDQIDDILTYIPSIFGLALSCCEDLPKARINMADVIKSLIKIKTLVLRANRV* 991
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g1838 990 SMART LRR_typ_2 266 290 IPR003591 -
Mtr8g1838 990 SMART LRR_typ_2 97 121 IPR003591 -
Mtr8g1838 990 SMART LRR_typ_2 145 168 IPR003591 -
Mtr8g1838 990 SMART LRR_typ_2 417 436 IPR003591 -
Mtr8g1838 990 SMART LRR_typ_2 441 464 IPR003591 -
Mtr8g1838 990 SMART LRR_typ_2 513 537 IPR003591 -
Mtr8g1838 990 SMART LRR_typ_2 217 241 IPR003591 -
Mtr8g1838 990 SMART LRR_typ_2 465 489 IPR003591 -
Mtr8g1838 990 SMART LRR_typ_2 193 216 IPR003591 -
Mtr8g1838 990 SMART LRR_typ_2 169 192 IPR003591 -
Mtr8g1838 990 SMART LRR_typ_2 561 584 IPR003591 -
Mtr8g1838 990 Gene3D Ribonuclease Inhibitor 29 314 IPR032675 -
Mtr8g1838 990 ProSitePatterns Protein kinases ATP-binding region signature. 711 733 IPR017441 GO:0005524
Mtr8g1838 990 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 172 985 - -
Mtr8g1838 990 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 4 146 - -
Mtr8g1838 990 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 126 207 - -
Mtr8g1838 990 SUPERFAMILY RNI-like 265 603 - -
Mtr8g1838 990 Pfam Protein kinase domain 706 907 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr8g1838 990 Pfam Leucine Rich repeat 341 357 IPR001611 GO:0005515
Mtr8g1838 990 Pfam Leucine Rich Repeat 563 585 IPR001611 GO:0005515
Mtr8g1838 990 Gene3D Ribonuclease Inhibitor 322 640 IPR032675 -
Mtr8g1838 990 Gene3D Transferase(Phosphotransferase) domain 1 781 987 - -
Mtr8g1838 990 SUPERFAMILY L domain-like 30 260 - -
Mtr8g1838 990 SUPERFAMILY Protein kinase-like (PK-like) 687 978 IPR011009 -
Mtr8g1838 990 ProSitePatterns Serine/Threonine protein kinases active-site signature. 824 836 IPR008271 GO:0004672|GO:0006468
Mtr8g1838 990 SMART serkin_6 705 984 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr8g1838 990 Gene3D Phosphorylase Kinase; domain 1 686 780 - -
Mtr8g1838 990 Pfam Leucine rich repeat 171 229 IPR001611 GO:0005515
Mtr8g1838 990 Pfam Leucine rich repeat 400 454 IPR001611 GO:0005515
Mtr8g1838 990 ProSiteProfiles Leucine-rich repeat profile. 419 442 IPR001611 GO:0005515
Mtr8g1838 990 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR ISOFORM X1 172 985 - -
Mtr8g1838 990 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR ISOFORM X1 4 146 - -
Mtr8g1838 990 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR ISOFORM X1 126 207 - -
Mtr8g1838 990 ProSiteProfiles Protein kinase domain profile. 705 984 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr8g1838 990 SMART LRR_sd22_2 561 582 - -
Mtr8g1838 990 SMART LRR_sd22_2 513 532 - -
Mtr8g1838 990 SMART LRR_sd22_2 417 440 - -
Mtr8g1838 990 SMART LRR_sd22_2 441 467 - -
Mtr8g1838 990 SMART LRR_sd22_2 217 243 - -
Mtr8g1838 990 SMART LRR_sd22_2 537 560 - -
Mtr8g1838 990 SMART LRR_sd22_2 169 201 - -
Mtr8g1838 990 Pfam Leucine rich repeat N-terminal domain 31 70 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g1838 Mtr-Chr8 27685422 27697096 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g1838 31 990 Receptor kinase-like Gene Family AT3G47570 37.688 0.0 605
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Mtr8g1838 Pkinase 1.9e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g1838 - K13420 mtr:MTR_8g465340 1142.1