Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g1827 GCCTTTGGCTCTGTATATCGGGGGAATCTCCGCAATGATGAGATGATTGCGGTTAAAGTAATTGATTTGCAGTCAGAGGCAAAAGCAAAGAGCTTTGATGTAGAATGCAATGCAACGAGAAATCTACGACATCGAAATCTTGTTAAGATTATTTGTAGTTGTTCAAATCTCGATTTCAAATCATTGGTGATGGAGTTCATGTCAAATGGAAGTGTGGACAAATGGTTATATTTAAATAATTGTTGTTTGAGTTTCTTGCAAAGGTTGAATATAATGATAGATGTTGCATCTGCATTGGAATATCTCCATCATGGTTCTTCAATACCTGTGGTTCATTGCGATCTAAAGCCTTCTAATGTCATGTTGGATAAAAATATGGTTGCACATGTTAGTGATTTTGGTATTGCCAAGCTCATCGATGAAGGCCGATCTAAATGCCATACACAAACTTTTCCTACTATTGGATACATTGCACCAGAGTATGGATCTAAAGGAATTGTTTCTGTGAAAGGAGATGTGTACAGCTATGGGATTATGCTAATGGAAATCTTCACAAGAAAAAAGCCAACAGATGATATGTTTGTTGCAGAACTAAACTTGAAGACATGGATCAATGGATCATTGCCTAATTCAATTATGGAGGTCTTGGATTCAAATTTAGTCCAACAAATTGGGGAACAAATTGATGACATATTGACTCACATATCATCTATTTTTGGTTTAGCCCTCAGTTGTTGTGAAGATTTACCTAAAGCAAGAATTAATATGGCAGATGTTATTAAGTCGCTAATCAAAATCAAGACTTTGGTTCTTAGAGCAAACAGGGTATAG 831 0.3598 AFGSVYRGNLRNDEMIAVKVIDLQSEAKAKSFDVECNATRNLRHRNLVKIICSCSNLDFKSLVMEFMSNGSVDKWLYLNNCCLSFLQRLNIMIDVASALEYLHHGSSIPVVHCDLKPSNVMLDKNMVAHVSDFGIAKLIDEGRSKCHTQTFPTIGYIAPEYGSKGIVSVKGDVYSYGIMLMEIFTRKKPTDDMFVAELNLKTWINGSLPNSIMEVLDSNLVQQIGEQIDDILTHISSIFGLALSCCEDLPKARINMADVIKSLIKIKTLVLRANRV* 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g1827 276 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 2 270 - -
Mtr8g1827 276 ProSiteProfiles Protein kinase domain profile. 1 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr8g1827 276 SUPERFAMILY Protein kinase-like (PK-like) 1 264 IPR011009 -
Mtr8g1827 276 Pfam Protein kinase domain 2 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr8g1827 276 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 2 270 - -
Mtr8g1827 276 Gene3D Phosphorylase Kinase; domain 1 1 67 - -
Mtr8g1827 276 SMART serkin_6 1 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr8g1827 276 PIRSF ILK 3 217 - -
Mtr8g1827 276 PIRSF ILK 239 274 - -
Mtr8g1827 276 ProSitePatterns Serine/Threonine protein kinases active-site signature. 110 122 IPR008271 GO:0004672|GO:0006468
Mtr8g1827 276 Gene3D Transferase(Phosphotransferase) domain 1 68 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g1827 Mtr-Chr8 27479593 27481074 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g1827 1 276 Receptor kinase-like Gene Family AT3G47570 40.199 2.71e-71 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Mtr8g1827 Pkinase 1.7e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g1827 - K13420 mtr:MTR_0070s0020 471.855