LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mtr8g1825	ATGACCAACTTGCTACTTCTTTCTATTTTTGGGAATAATATAACTGGACGAATACCTGGTACATTCAAAGAGTTGCAGAAACTTCAGTATTTGAATCTTGGCAACAATGGACTACAAGGATCATTTATTGAAGAGTTTTGTGAAATGAAGAGTTTGGGTGAGTTGTATCTGGAAAATAATAAGCTCTCTGGAGTTTTACCAACATGTTTGGGAAATATGACTTCTCTTAGAATATTGAACATTGGATCTAATGATTTGAACTCTAAGATACCGTCCTCTCTTTGGAGTCTCAAAGATATCTTACTAGTAAATTTGTTCTCTAATGCTCTCATTGGTGATCTTCCACCTGAGGTTGGGAATTTGAGACAAATTGTAGTATTAGATCTATCAAGAAATCATATTTCAAGAAACATTCCCACAACCATCAGTTCCTTACAAAATTTGCAGACTCTGTCCTTAGCTCATAACAAATTGAATGGATCAATTCCCTCATCACTTAGTGAAATGGTAAGCTTGGTCTCTTTGGACTTGTCCCAAAATATGCTAGATGGTGTTATTCCAAAATCCTTAGAATCACTTTTGTACCTTCAAAACATCAACTTCTCATATAATAGATTACAAGGAGAGATTCCTGATGGTGGACATTTCAAAAACTTCACAGCTCAATCATTCATGCATAATGATGCACTTTGCGGTGATCCTCGACTCATAGTACCTCCATGTGATAAGCAAGTTAAAAAATGGTCAATGGAAAAAAAGCTTATATTGAAATGCATACTTCCTATAGTTGTGTCAGTCGTTTTGATTGTTGCGTGCATCATACTTTTAAAACATAATAAAGGGAAAAAGAACGAAACTACTCTTGAAAGGGGTTTTTCAACTTTAGGAGCTCCAAGAAGAATATCCTATTATGAAATTGTGCAAGCAACTAATGGATTCAATGAGAGTAATTTCCTTGGAAGGGGGGGATTTGGCTCTGTTTATCAGGGGAAGCTTCTTGATGGTGAGATGATTGCCGTTAAAGTAATTGATTTGCAATCAGAGGCAAAATCAAAGAGCTTTGATGCAGAATGCAATGCGATGAGAAATCTACGACATCGGAATCTGGTAAAGATTATCAGTTGTTGCTCAAATCTTGATTTCAAATCATTGGTGATGGAGTTCATGTCAAATGGAAGTGTAGACAAATGGTTATATTCAAATAATTATTGTCTAAGTTTCTTGCAAAGGTTAAATATAATGATAGATGTTGCATCTGCATTGGAATATCTCCATCGTGGTTCTTCAATACCAGTGGTTCATTGTGATCTAAAGCCTTCCAATGTCTTGTTGGATGAAAATATGGTTGCACATGTTAGCGATTTTGGTATTGCAAAGCTCATGGATGAAGGACAATCTCAAACTCATACACAAACTTTGGCTACTATTGGATATCTTGCACCAGAGTATGGTTCTAGAGGAATTGTTTCTGTCAAAGGAGACGTGTACAGCTATGGGATTATGCTAATGGAAATCTTCACAAGAAGAAAGCCAACAGATGATATGTTTGTTGCAGAACTAAGCTTGAAGACATGGATCAGTGAATCATTGCCTAATTCAATTATGGAGGTCATGGATTCAAATTTAGTCCAACTAACTGGGGACCAAATTGATGATATATCGACTCACATGTCATCTATTTTTAGTTTAGCCCTGAGTTGTTGTGAAAATTCACCTGAAGCAAGAATTAATATGGCAGATGTTATTGCGTCGCTAATGAAAATAAAGGCTTTGGTTCTTGGCGCAAACAGGGTCTAG	1797	0.3617	MTNLLLLSIFGNNITGRIPGTFKELQKLQYLNLGNNGLQGSFIEEFCEMKSLGELYLENNKLSGVLPTCLGNMTSLRILNIGSNDLNSKIPSSLWSLKDILLVNLFSNALIGDLPPEVGNLRQIVVLDLSRNHISRNIPTTISSLQNLQTLSLAHNKLNGSIPSSLSEMVSLVSLDLSQNMLDGVIPKSLESLLYLQNINFSYNRLQGEIPDGGHFKNFTAQSFMHNDALCGDPRLIVPPCDKQVKKWSMEKKLILKCILPIVVSVVLIVACIILLKHNKGKKNETTLERGFSTLGAPRRISYYEIVQATNGFNESNFLGRGGFGSVYQGKLLDGEMIAVKVIDLQSEAKSKSFDAECNAMRNLRHRNLVKIISCCSNLDFKSLVMEFMSNGSVDKWLYSNNYCLSFLQRLNIMIDVASALEYLHRGSSIPVVHCDLKPSNVLLDENMVAHVSDFGIAKLMDEGQSQTHTQTLATIGYLAPEYGSRGIVSVKGDVYSYGIMLMEIFTRRKPTDDMFVAELSLKTWISESLPNSIMEVMDSNLVQLTGDQIDDISTHMSSIFSLALSCCENSPEARINMADVIASLMKIKALVLGANRV*	599

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mtr8g1825	598	SMART	serkin_6	313	592	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mtr8g1825	598	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	432	444	IPR008271	GO:0004672\|GO:0006468
	Mtr8g1825	598	Gene3D	Ribonuclease Inhibitor	1	249	IPR032675	-
	Mtr8g1825	598	SUPERFAMILY	L domain-like	1	234	-	-
	Mtr8g1825	598	Gene3D	Phosphorylase Kinase; domain 1	296	388	-	-
	Mtr8g1825	598	Pfam	Protein kinase domain	314	582	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mtr8g1825	598	Gene3D	Transferase(Phosphotransferase) domain 1	389	593	-	-
	Mtr8g1825	598	ProSiteProfiles	Protein kinase domain profile.	313	592	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mtr8g1825	598	PANTHER	LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR	2	591	-	-
	Mtr8g1825	598	ProSitePatterns	Protein kinases ATP-binding region signature.	319	341	IPR017441	GO:0005524
	Mtr8g1825	598	SUPERFAMILY	Protein kinase-like (PK-like)	292	586	IPR011009	-
	Mtr8g1825	598	Pfam	Leucine rich repeat	3	62	IPR001611	GO:0005515
	Mtr8g1825	598	Pfam	Leucine rich repeat	124	182	IPR001611	GO:0005515
	Mtr8g1825	598	SMART	LRR_typ_2	145	169	IPR003591	-
	Mtr8g1825	598	SMART	LRR_typ_2	49	72	IPR003591	-
	Mtr8g1825	598	SMART	LRR_typ_2	121	144	IPR003591	-
	Mtr8g1825	598	SMART	LRR_typ_2	73	97	IPR003591	-
	Mtr8g1825	598	PANTHER	LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED	2	591	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mtr8g1825	Mtr-Chr8	27379774	27382543	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mtr8g1825	1	598	Receptor kinase-like Gene Family	AT3G47570	37.600	1.38e-128	400

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-XII-1	Mtr8g1825		Pkinase	5e-46	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mtr8g1825	-		K13420	mtr:MTR_0070s0020	1005.74