Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g1823 ATGTCAAATATTGTTCAATCCTATTTATCACATGACATGAAGTATGTGTTAGCTCTGCAAGCAAAAAAAAAAAAAAAAAAAAAGGAAAAAAGTGGTCGTATAGTTTATTGTCCCTCGAGAAATAACCATCTTAATAACATTGTTTCTTATCCATTTTCAGGTACGATTCCCGAGGAGATTGGCTATCTTGATAAACTTGAGGTGTTATACTTGTCTAACAATAGCTTAAGTGGATCTATTCCTTCCAAAATCTTCAACTTGTCATCACTCACTCATTTGGGGGTTTATCATAATAGTCTCTCAGGCACACTTCCATCAAATACGGGATATAGTCTTCCTAGTCTGCAATATCTATTCTTGAATGATAACAATTTTGTTGGAAATATTCCAAATAACATATTCAACTCTTCTAATCTTATTGTATTTCAATTGAATGACAATGCATTCAGTGGAACTCTACCCAATATTGCTTTTGGAGATTTAGGATTGCTTGAATCGTTTCACATACATAACAACAATTTGACAATAGATGATTCTCACCAATTCTTTACTTCCTTGACAAATTGTAGATATTTGAAGTATCTAGACTTATCAGGTAATCATATACCCAATCTTCCTAAGTCAATTGGAAACATAAGTTCAGAATACATCAGGGCAGAATCATGTGGAATTGGTGGTTATATTCCCCAAGAAGTTGGAAACATGACCAACTTGCTAACTTTTTCTCTTTTTGGGAATAATATAACTGGACCAATACCTCGTTCAGTCAAAGGGTTGCAGAAACTTCAAGGATTGTCTCTTGGCTACAATGAACTCCAAGGATCATTTATTGAAGAGTTTTGTGAAATGAAGAGTTTGGGTGAATTGTATCTAGAAAATAATAAGCTTTCTGGAGTTTTACCAACATGTTTGGGAAATATGACTTCTCTTAGAAAATTGTATATAGGATCTAACAATTTTAACTCTATGATACCTTCCTCTCTTTGGAGTCTCATAGATATCTTAATGGTAGATTTATCCTCCAATGCATTTATTGGTGATCTTCCACTCGAGATTGGGAATTTGAGAGAACTTGTAATATTAGATCTATCAAGAAATCAAATTTCAAGCAACATTCCTACAACCATCAGTTCCTTACAAAATTTGCAGAATCTCTCCTTAGCTCATAATAAATTGAATGGGTCAATTCCCGCATCACTGAATGGAATGCTAAGCTTGATCTCTTTGGACTTGTCTCAAAATATGTTAACTGGTGTTATTCCAAAATCCTTAGAATCACTTTTGTACCTTCAAAACATCAACTTCTCATATAATAGATTACAAGGAGAGATTCCTAATGGTGGACATTTCAAAAATTTCACAGCTCAATCATTTATGCATAATGAAGCACTTTGCGGTGATCCTCACCTTCAAGTACCTACATGTGGTAAGCAAGTTAAGAAATGGTCAATGGAAAAAAAGCTTATATTGAAATGCATACTTCCCATAGTTGTGTCATCCATTTTGGTTGTTGCGTGCATCATACTTTTAAAGCATAATAAAAGGAAAAAGAACAAAACTTCTCTTGAAAGGGGTTTGTCAACTTTGGGAGCTCCAAGAAGAATATCCTATTATGAAATTGTGCAAGCAACTAATGGATTCAATGAGAGTAATTTCCTTGGAAGGGGGGGATTTGGCTCTGTTTATCAGGGCAAGCTTCTTGATGGTGAGATGATTGCCGTTAAAGTAATTGATTTGCAATCAGAGGCAAAATCAAAGAGCTTTGATGCAGAATGCAATGCAATGAGAAATCTACGACATCGAAATCTGGTTAAGATTATCAGCAGTTGTTCAAATCTTGATTTCAAATCATTGGTGATGGAGTTCATGTCAAATGGAAGTGTAGACAGTTGGTTATATTCAAATAACTATTGTCTAAGTTTCTTGCAAAGGTTAAATATAATGATAGATGTTGCATCTGCATTGGAATATCTTCATCATGGTTCTTCAATGCCTGTGGTTCATTGTGATCTAAAGCCTTCCAATGTCTTATTGGATGAAAATATGGTTGCACATGTAAGCGATTTTGGTATTGCCAAGCTCATGGATGAAGGACAATCTAAAACTCATACACAAACTTTGGCTACTATTGGATATCTTGCACCAGAGTATGGATCTAAAGGAATTGTTTCTGTGAAAGGAGATGTGTACAGCTATGGGATCATGTTAATGGAAATCTTCACAAGAAGAAAGCCAACAGATGATATGTTTGTTGCTGAACTAAACTTGAAGACATGGATTAGTGGATCATTGACTAATTCAATTATGGAGGTCTTGGATTCAAATTTAGTCCAACAAATTGGGGAACAAATTGATGACATATTGACTTACATGTCATCTATTTTTGGTTTAGCCCTGAAATGTTGTGAAGATTCACCTGAAGCAAGAATTAATATTGCAGATGTTATTGCGACGCTAATCAAAATCAAGACTTTGGTTGTTGGCGCAAACACAGTCTAG 2499 0.3469 MSNIVQSYLSHDMKYVLALQAKKKKKKKEKSGRIVYCPSRNNHLNNIVSYPFSGTIPEEIGYLDKLEVLYLSNNSLSGSIPSKIFNLSSLTHLGVYHNSLSGTLPSNTGYSLPSLQYLFLNDNNFVGNIPNNIFNSSNLIVFQLNDNAFSGTLPNIAFGDLGLLESFHIHNNNLTIDDSHQFFTSLTNCRYLKYLDLSGNHIPNLPKSIGNISSEYIRAESCGIGGYIPQEVGNMTNLLTFSLFGNNITGPIPRSVKGLQKLQGLSLGYNELQGSFIEEFCEMKSLGELYLENNKLSGVLPTCLGNMTSLRKLYIGSNNFNSMIPSSLWSLIDILMVDLSSNAFIGDLPLEIGNLRELVILDLSRNQISSNIPTTISSLQNLQNLSLAHNKLNGSIPASLNGMLSLISLDLSQNMLTGVIPKSLESLLYLQNINFSYNRLQGEIPNGGHFKNFTAQSFMHNEALCGDPHLQVPTCGKQVKKWSMEKKLILKCILPIVVSSILVVACIILLKHNKRKKNKTSLERGLSTLGAPRRISYYEIVQATNGFNESNFLGRGGFGSVYQGKLLDGEMIAVKVIDLQSEAKSKSFDAECNAMRNLRHRNLVKIISSCSNLDFKSLVMEFMSNGSVDSWLYSNNYCLSFLQRLNIMIDVASALEYLHHGSSMPVVHCDLKPSNVLLDENMVAHVSDFGIAKLMDEGQSKTHTQTLATIGYLAPEYGSKGIVSVKGDVYSYGIMLMEIFTRRKPTDDMFVAELNLKTWISGSLTNSIMEVLDSNLVQQIGEQIDDILTYMSSIFGLALKCCEDSPEARINIADVIATLIKIKTLVVGANTV* 833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g1823 832 SMART serkin_6 547 826 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr8g1823 832 Pfam Protein kinase domain 548 816 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr8g1823 832 ProSiteProfiles Leucine-rich repeat profile. 65 87 IPR001611 GO:0005515
Mtr8g1823 832 Pfam Leucine rich repeat 237 296 IPR001611 GO:0005515
Mtr8g1823 832 Pfam Leucine rich repeat 65 125 IPR001611 GO:0005515
Mtr8g1823 832 Gene3D Phosphorylase Kinase; domain 1 530 622 - -
Mtr8g1823 832 SMART LRR_typ_2 355 378 IPR003591 -
Mtr8g1823 832 SMART LRR_typ_2 112 136 IPR003591 -
Mtr8g1823 832 SMART LRR_typ_2 63 87 IPR003591 -
Mtr8g1823 832 SMART LRR_typ_2 307 331 IPR003591 -
Mtr8g1823 832 SMART LRR_typ_2 403 426 IPR003591 -
Mtr8g1823 832 SMART LRR_typ_2 379 402 IPR003591 -
Mtr8g1823 832 SMART LRR_typ_2 186 212 IPR003591 -
Mtr8g1823 832 SMART LRR_typ_2 283 306 IPR003591 -
Mtr8g1823 832 SMART LRR_sd22_2 403 424 - -
Mtr8g1823 832 SMART LRR_sd22_2 235 261 - -
Mtr8g1823 832 SMART LRR_sd22_2 355 374 - -
Mtr8g1823 832 SMART LRR_sd22_2 63 89 - -
Mtr8g1823 832 SMART LRR_sd22_2 186 214 - -
Mtr8g1823 832 SMART LRR_sd22_2 379 402 - -
Mtr8g1823 832 SUPERFAMILY Protein kinase-like (PK-like) 524 819 IPR011009 -
Mtr8g1823 832 Pfam Leucine Rich Repeat 405 427 IPR001611 GO:0005515
Mtr8g1823 832 ProSiteProfiles Protein kinase domain profile. 547 826 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr8g1823 832 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 49 826 - -
Mtr8g1823 832 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR ISOFORM X1 49 826 - -
Mtr8g1823 832 ProSitePatterns Serine/Threonine protein kinases active-site signature. 666 678 IPR008271 GO:0004672|GO:0006468
Mtr8g1823 832 SUPERFAMILY L domain-like 52 272 - -
Mtr8g1823 832 Gene3D Transferase(Phosphotransferase) domain 1 623 827 - -
Mtr8g1823 832 Gene3D Ribonuclease Inhibitor 158 483 IPR032675 -
Mtr8g1823 832 SUPERFAMILY L domain-like 219 469 - -
Mtr8g1823 832 ProSiteProfiles Leucine-rich repeat profile. 191 212 IPR001611 GO:0005515
Mtr8g1823 832 Gene3D Ribonuclease Inhibitor 17 110 IPR032675 -
Mtr8g1823 832 Gene3D Ribonuclease Inhibitor 111 157 IPR032675 -
Mtr8g1823 832 ProSitePatterns Protein kinases ATP-binding region signature. 553 575 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g1823 Mtr-Chr8 27352529 27355223 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g1823 38 823 Receptor kinase-like Gene Family AT3G47570 37.500 2.26e-165 504
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Mtr8g1823 Pkinase 7.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g1823 - K13420 mtr:MTR_8g469650 1279.23