Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g1816 ATGGAAGAAGAGAAGCTTAATGAGAAATCAAGGTCAAGCATGACTATTCTACTTCAAAGTCAAAAACTTCCATACTCTTCTGAGCTTATCGACTCTCTCTTGGTTCACAATCAAAGCTCAAAACCTTCTTTTCAAGGTTCCAATTCTATGGTTAATGTTGGTGACATGGAAGTTAAAAGTAGTTCTTTCTTTCAAGCTTCTGAGAAAGAAGAGAACAATGATGATGATGATGAGAACTACGAGGTATGCTTGCAACAACCCGGTAAGAAAAGGAGGCTTACAAACGAACAAGTTCATTTTCTTGAAAGCAATTTTGAGATAGAAAACAAGCTTGAACCTGAAAGGAAAGTTCAACTTGCAAAGGAGCTTAGCTTGCAGCCAAGACAAGTGGCTATATGGTTCCAAAATAGGAGAGCAAGATTCAAAACCAAACAGCTAGAAAAGGACTATGGTTCATTGAAAGCTAGCTATGATATGCTCAAAGTTGACTATGACAATCTCCTTCAAGAAAACAACAAATTAAAAGAAGAGGTTATTTCTCTCAAGAAAAGATTGGTCCCAAGAGAAAAACAGGAAAATAATTTAGTTGCTAAATCCCTTGATGATATCATTTCACAGCATAAAACTGATGTGGTTGATTCAGAATGCCTACAGAACACTGATGGAAACCAATCCTTAGTTGTGGAACCAAACCAGTCAGAATTTTCACAAGATGAAGAAGACATCCTAAGCCAAAACATCTTGAATGTTCCATTCATACCAAAAGTTGCAGATATTGGATGTTATGATGAACCACATGAAAGTTGTTGTAGCTTTCAGTTCCCTTTTGAAGATCAAACTTTTTACTTTTGGTCCTACTGA 861 0.3635 MEEEKLNEKSRSSMTILLQSQKLPYSSELIDSLLVHNQSSKPSFQGSNSMVNVGDMEVKSSSFFQASEKEENNDDDDENYEVCLQQPGKKRRLTNEQVHFLESNFEIENKLEPERKVQLAKELSLQPRQVAIWFQNRRARFKTKQLEKDYGSLKASYDMLKVDYDNLLQENNKLKEEVISLKKRLVPREKQENNLVAKSLDDIISQHKTDVVDSECLQNTDGNQSLVVEPNQSEFSQDEEDILSQNILNVPFIPKVADIGCYDEPHESCCSFQFPFEDQTFYFWSY* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g1816 286 PANTHER HOMEOBOX LEUCINE ZIPPER FAMILY PROTEIN 1 197 - -
Mtr8g1816 286 PANTHER HOMEOBOX LEUCINE ZIPPER FAMILY PROTEIN 196 286 - -
Mtr8g1816 286 Coils Coil 157 184 - -
Mtr8g1816 286 CDD homeodomain 87 145 IPR001356 GO:0003677
Mtr8g1816 286 Gene3D - 83 150 - -
Mtr8g1816 286 ProSitePatterns 'Homeobox' domain signature. 119 142 IPR017970 GO:0000981|GO:0006355
Mtr8g1816 286 SMART HOX_1 86 148 IPR001356 GO:0003677
Mtr8g1816 286 ProSiteProfiles 'Homeobox' domain profile. 84 144 IPR001356 GO:0003677
Mtr8g1816 286 SUPERFAMILY Homeodomain-like 79 146 IPR009057 -
Mtr8g1816 286 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 197 IPR045224 GO:0003700
Mtr8g1816 286 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 196 286 IPR045224 GO:0003700
Mtr8g1816 286 Pfam Homeobox associated leucine zipper 144 185 IPR003106 GO:0006355|GO:0043565
Mtr8g1816 286 Pfam Homeodomain 89 142 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g1816 Mtr-Chr8 27282218 27284762 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g1816 46 193 Homeobox Transcription Factor Family AT3G01470 52.027 6.59e-43 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Mtr8g1816 Homeodomain 2.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g1816 - K09338 gmx:100804328 318.931
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g1816 8 27282218 27284762 Mtr8g1816 8 27282218 27284762 ECH
Mtr5g1582 5 17092321 17094717 Mtr8g1816 8 27282218 27284762 PCT