Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g1808 ATGAAAAGGTCCAAAGATAATGATGTTGCTGACATTGATTCACAACCCAAACGCCCCACCCTATCTACCACACAAGAATCGAATTTGTTTGTCGAACTGAGTACCGAGAAGGCCAAAGATTTGCAAGGTGATCATGATCTCATTGCCAAAAATCTTGATCCAGAATTTAACAAAGGTTTGATGAGTGCAGAGGTGTCTGATGGACGAAACAGTGACATGACCATTCATAAGAAAGGTAATCGCGACCTCATTGTCGAACATCCTGATCCAGAAATTGACAAAGGTTCGATGAGTGCAAATGAGAAGCGTGACGAAAAAAAGGAGTGTCATACAGTTATGTCGAGTGAAGCGTTTTCTTACCTGAACAAAGTCACAGAGAGGTTAGGAATACTCGAGGATTACCAAAAATTTGAGAAGTCCCTACATAGCTACAGAATGGGAACAATTACAAGAGAAGAACTACAAAAAATGGTAGGCGATTTGTTGGGAAAACACTCCGATCTTGTGGAGGGATTTAACGAGTTTTTGACACAATGCGAATCCAACGAAGGATTATTTGGTCATGTCTTAAATAAAATTATGTTCAGAGAAGAGCATGTCTTCCTTGAAAAAGTCAAAGAGAAATTTAGCAATCCTGAAATTTATCAGGATTTTTTGAAGTGCCTACATATCTATGCCAGAGAATTAATTACCCGAGGAGAATTACAACTATTGGTGTATGATTTATTTGGAAAATATACCGATCTTATGGTCGAATTTAACGATTTCATGGCACAAAGTGAAAAGAAGAATGCCAAACTTGTTAAAGCTTTGAAGGGTCGTCAAATACATGCTTCTGTGTCTCTTAATCAATCTTGA 858 0.38 MKRSKDNDVADIDSQPKRPTLSTTQESNLFVELSTEKAKDLQGDHDLIAKNLDPEFNKGLMSAEVSDGRNSDMTIHKKGNRDLIVEHPDPEIDKGSMSANEKRDEKKECHTVMSSEAFSYLNKVTERLGILEDYQKFEKSLHSYRMGTITREELQKMVGDLLGKHSDLVEGFNEFLTQCESNEGLFGHVLNKIMFREEHVFLEKVKEKFSNPEIYQDFLKCLHIYARELITRGELQLLVYDLFGKYTDLMVEFNDFMAQSEKKNAKLVKALKGRQIHASVSLNQS* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g1808 285 ProSiteProfiles PAH domain profile. 103 179 IPR003822 GO:0006355
Mtr8g1808 285 PANTHER PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 2 ISOFORM X1 192 272 - -
Mtr8g1808 285 PANTHER PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 2 ISOFORM X1 103 189 - -
Mtr8g1808 285 MobiDBLite consensus disorder prediction 85 108 - -
Mtr8g1808 285 PANTHER SIN3B-RELATED 103 189 IPR039774 GO:0003714
Mtr8g1808 285 PANTHER SIN3B-RELATED 192 272 IPR039774 GO:0003714
Mtr8g1808 285 ProSiteProfiles PAH domain profile. 191 260 IPR003822 GO:0006355
Mtr8g1808 285 SUPERFAMILY PAH2 domain 191 259 IPR036600 GO:0006355
Mtr8g1808 285 MobiDBLite consensus disorder prediction 1 28 - -
Mtr8g1808 285 Gene3D Paired amphipathic helix 190 261 IPR036600 GO:0006355
Mtr8g1808 285 Gene3D Paired amphipathic helix 108 181 IPR036600 GO:0006355
Mtr8g1808 285 SUPERFAMILY PAH2 domain 112 177 IPR036600 GO:0006355
Mtr8g1808 285 Pfam Paired amphipathic helix repeat 132 176 IPR003822 GO:0006355
Mtr8g1808 285 Pfam Paired amphipathic helix repeat 213 256 IPR003822 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g1808 Mtr-Chr8 27169813 27174549 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Mtr8g1808 PAH 2.3e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g1808 K11644 - mtr:MTR_8g469180 569.696