Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g1788 ATGAATTCTTGCCAACTAGTGATTCACATGTTCCACACTCCAATTCGTTCTCTCACATTTCCATGCACAACAAAACCACCTCACCTCAACATTCATCTCCTCCTTTCCCTTCCTGCACCAACGCTCCTTTCCTCTTCACTCAATGATGATTCCTTTTCCATTCCAAAATCATCCCAGTTTGGGTACAGTTCTCCAGAGGATCTGTTTGGGCTGGAGGTGGAATTTAAGCCAAGGAAAGCTAACTCTCATACAAGAGAACCAAGGTCTTGGTTTGGTCCAAATGGACAATATATCAGAGAGCTACCTTGTCCAAGTTGTCGAGGAAGGGGTTATACTCCTTGTGCAGAATGTGGAATAGAACGATCTAGATCAGACTGTCCAAAATGTAATGGAAAGGGTTTACTGACTTGCCACCAGTGCTCTGGAGATTGTGTTATATGGGAAGAGTCGATTGATGAACGACCATGGGAGAGAGCTCAATCAATATCTCCACTCAAAGTGAAGGATGACGATGAAGTTGACAAATTGGACATAAAGCTAGATGCAAAGAAAAAATCCAAGCGTGTTTACCAGTCACCATCTCCTGAAGTTGGATTGAAGATTAGTCGTTCATTAAAAAGTCTCAATGCCAAAACTGGTCTATTTAGCAAACGAATGAAGATCATCCACCAGGATCCCACGCTTCAGGCACAGCGAGTGGCCGCTATTAAGAAAGCCAAGAGGACTGTTTCAGCGAGAAATCATGCTTCCAAAACTATGAAAGATTTCTTTAGTGATCCAATAAACCGTGAAAAAAGGAGCATGGCCATGCAAGGTGTGAAATTCTATTGTCAAAACTGTGGACGTGAAGGACATAGGAGACACTACTGTCCAGAACTAAAGGATGGTTTGATTGATCGGCGATTCACATGTAGACTATGTGGCGAAAAAGGCCACAACAGAAGAACATGCAGTAAGTTAAGGATAAGCCATAGTGATGGGAGAGTTATAAAACATCATCGATGTAAAATATGTCGACAATATGGCCATAACCGAAGAACATGCCCTCAAGTTATTTCAAATAAAAGAATGGATATGACATCTCAGAGAGTATACAAATGTCGATTGTGCCAGAAAGAGGGACACAATAGTAGGACATGTCCTAGTAGAATAGTTGGCATTGAACATTCTCTAGAATAA 1179 0.4156 MNSCQLVIHMFHTPIRSLTFPCTTKPPHLNIHLLLSLPAPTLLSSSLNDDSFSIPKSSQFGYSSPEDLFGLEVEFKPRKANSHTREPRSWFGPNGQYIRELPCPSCRGRGYTPCAECGIERSRSDCPKCNGKGLLTCHQCSGDCVIWEESIDERPWERAQSISPLKVKDDDEVDKLDIKLDAKKKSKRVYQSPSPEVGLKISRSLKSLNAKTGLFSKRMKIIHQDPTLQAQRVAAIKKAKRTVSARNHASKTMKDFFSDPINREKRSMAMQGVKFYCQNCGREGHRRHYCPELKDGLIDRRFTCRLCGEKGHNRRTCSKLRISHSDGRVIKHHRCKICRQYGHNRRTCPQVISNKRMDMTSQRVYKCRLCQKEGHNSRTCPSRIVGIEHSLE* 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g1788 392 SMART c2hcfinal6 366 382 IPR001878 GO:0003676|GO:0008270
Mtr8g1788 392 SMART c2hcfinal6 334 350 IPR001878 GO:0003676|GO:0008270
Mtr8g1788 392 SMART c2hcfinal6 276 292 IPR001878 GO:0003676|GO:0008270
Mtr8g1788 392 SMART c2hcfinal6 303 319 IPR001878 GO:0003676|GO:0008270
Mtr8g1788 392 PANTHER ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN 43 384 - -
Mtr8g1788 392 ProSiteProfiles Zinc finger CCHC-type profile. 304 319 IPR001878 GO:0003676|GO:0008270
Mtr8g1788 392 ProSiteProfiles Zinc finger CCHC-type profile. 277 292 IPR001878 GO:0003676|GO:0008270
Mtr8g1788 392 SUPERFAMILY Retrovirus zinc finger-like domains 328 383 IPR036875 GO:0003676|GO:0008270
Mtr8g1788 392 SUPERFAMILY Retrovirus zinc finger-like domains 274 320 IPR036875 GO:0003676|GO:0008270
Mtr8g1788 392 PANTHER ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN 43 384 - -
Mtr8g1788 392 Gene3D - 272 320 - -
Mtr8g1788 392 Gene3D - 330 385 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g1788 48 385 C2H2 Transcription Factor Family AT5G20220 63.506 2.49e-157 447
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g1788 - - cam:101493936 596.275
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g1788 8 26919005 26923782 Mtr8g1788 8 26919005 26923782 ECH