Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g1787 ATGTCTCATTTGCAGTTACACCTACACTCACAACCACCATCACTCTCATCAACATCTTCTTCTTCTTTTTCTTCCCTCAAACTTTTCACAAACAACAACTCTTTCTCTCTTCCTTTCAAATTCAAACCCTTCACTATCAGATGCCGCCACTCTGACGTTTTCAACCCTTCCCCTTCAAACCCCCCTCCTCCTGCCACTACACCCCCCAACAACCCTTTAGTTGGAGCTTTGCCACCTAGGGTTTATGTTGGTCATTCTATTTACAAAGGGAAGGCTGCTCTCACTATCACTCCTACACCACCGAAATTCGTGACTTTGGATTCAGGGGCATACAAGATATCTAGGGATGGTTGTTTGCTGCTTCAGTTTGCACCTTCTGTTGGTCCGCGTCAATATGATTGGAATAGAAAACAGCTGTTCATGTTATCTGTGGATGAAATGGGAAGTGTGATTAGCCTTGGTGCAAGGGAGTCTTGTGAATTTTTTCATGATCCTTTCAAAGGCGGAAGTGATGAAGGCAAAGTCAGAAAGGTTTTGAAGATTGAGCCTTTTCCGGATGGTTCTGGTTTCTTCTTTAACCTCAGTGTTCAAGACAAAATTGTGAATGTGGATGTAAGCATGAATATCCCTGTATCTAAAGCAGAGTTATCAGTTCTACGCTCAATTTTCAAGTATATCATGCCATACCTTCTAGGTTGGCACGCGTTTGCTAACTCCATAAATCCGGAGTATTCCGCAGCATTGAACAATGTGGCCAACAATGCTAATCCAAGATATGGTGGAGACTACGAATGGAACAGATAG 804 0.4291 MSHLQLHLHSQPPSLSSTSSSSFSSLKLFTNNNSFSLPFKFKPFTIRCRHSDVFNPSPSNPPPPATTPPNNPLVGALPPRVYVGHSIYKGKAALTITPTPPKFVTLDSGAYKISRDGCLLLQFAPSVGPRQYDWNRKQLFMLSVDEMGSVISLGARESCEFFHDPFKGGSDEGKVRKVLKIEPFPDGSGFFFNLSVQDKIVNVDVSMNIPVSKAELSVLRSIFKYIMPYLLGWHAFANSINPEYSAALNNVANNANPRYGGDYEWNR* 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g1787 267 Pfam Whirly transcription factor 87 222 IPR013742 GO:0003697|GO:0006355|GO:0006952
Mtr8g1787 267 MobiDBLite consensus disorder prediction 1 20 - -
Mtr8g1787 267 Gene3D Transcriptional Coactivator Pc4; Chain A 74 250 IPR009044 GO:0003677|GO:0006355
Mtr8g1787 267 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY1, CHLOROPLASTIC 10 267 - -
Mtr8g1787 267 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 10 267 IPR013742 GO:0003697|GO:0006355|GO:0006952
Mtr8g1787 267 SUPERFAMILY ssDNA-binding transcriptional regulator domain 79 267 IPR009044 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g1787 Mtr-Chr8 26910114 26914094 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g1787 42 267 Whirly Transcription Factor Family AT1G14410 62.174 1.29e-102 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Mtr8g1787 Whirly 6.3e-59 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g1787 - - gmx:100789252 330.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g1787 8 26910114 26914094 Mtr8g1787 8 26910114 26914094 ECH
Mtr5g1566 5 16853316 16858605 Mtr8g1787 8 26910114 26914094 PCT