Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g1780 ATGTCCGGCGCCAAGAAAAACCAACCTCCTCTCAAGAAAACCAAAACTCATCACCTTCAATCCACTCCCTCCAAAAGCATACGTACATTCTTTCAACCACTCAACAGCCCTATTCCTCCCAAAAACCCTGATACTGAATCTCCTATCAAGCTTCCTCACCAAACATCAACTTCTTCGACTTCTTCTCCATCTTCTTCGTCCTCTTCCACCAATGTTGTTGAAGTGAAGAAACGGATTTCACTTTTGAAGAAGACACCGTCGGAGTTTGATCATAGCTCGGTTGCATGGTGGAAGAAGGGTGAACCGGTGCCGTTTTTGTTTCTCTCGTTGGCGTTTGACATGATCAAGGAAGAGAAAGGGAGGAATGCGATGTCGGATATTGGTTGTAATGTCTTGAGGACAGTGATGCATACTACGCCTGGTGATTTATTACCAGTTGTGTATCTATTTTCAAACAGGATTGCTCCACCGTATCAAGGTTTAGAAATGGGAGTTGGTAAAGCTGCTGTTATTAAGACACTTGCTGAGGCATGTGGAAGGACTGAGAAAGACGTTAAGGAGCACTATAAGAAATTAGGTGATTTGGGGTTAGTTGCTCAAGCTAGCCATTTGTCTCAGACGCTGCAGAAGTCTGATGCATTGACTATTACCAAGGTTTTCAATACCTTTCACCTTATTGCCAAGGAATCTGGAAAGGACAGTCAAAAGAAGAAAAATAATCTTATTAAATCGCTTCTTCATGCTTCGACTGACTGTGAACCTTTATATCTAGTCCGTTTACTACTGGTGAAGTTGCGAATTGGATATGCCGAGCAGACTCTCTTATCTGCATTGGGCCAAGCTGCAGTGTACACTGAAGAACATTCTAAACCGCCTCCTGGAATTCAGTCTCCTTTAGAAGAGGCTACAAAGATTGTCAAACAGGCCTATTCTGTTCTCCCTGATTATGACAAAATAATATCTGCAATGCTTACTGATGGTGTATGGCTACTTGCAAAGACTTGTAACTTTACTCCTGGTATTCCGGTTGAGCCTATGCTGTCAGAAAAAATCACAAGTGTATCTGAAGCTCTGAATAAGTTACGGAATGCAGAGTTGATTTGTGAATACAAATACGATGGAGAACGTGCTCAGATACATTACAAGGAGAATGGCTCGGTAGAGATTTACAGTAGAAGCTCAGAACGTAACACTGGGAAGTTTCCCGATGTTGTCGCTGCAGTTTCAAGGTTAAAGAAAAAAAATGTGTCATCGTTTGTTCTAGACTGTGAAATTGTTGCATATGATCGTAAAAAACAGAGAATCCTTCCTATGCAGGTGCTTAGTACTCGGGCAAGAAAAGATGTAGCCGTGAGTAACATAAAGGTTGATGTCTGTGTATTTCCTTTTGATTTGTTGCATCTTAATGGCCAAGCACTTCTTGAAGAAAACCTGAAAATCCGTAGAAAGCATCTCTATGCCTCATTTGAAGAGGAATCAGGATTTCTGCAGTTTTCAATGTCATTAATATCAAACGATGCTAAGGAAATACAGAAGTTTCTTGACAAATCTGTTGATGCAAGCTGTGAGGGACTAATTTTTAAAACATTAGACAAAGATTCTACATATCAACCTTCCGAACGGAACTGGCTAAAACTGAAGAAAGATTATATGAAAACTATAGGGGACACACTAGATTTGGTACCGATCGGCGCTTTCCATGGTCAAGGAAAACGAGCAGGAGTATACGGTTCCTTTCTCCTCGCTTGTTATGACGTCGATACACAAGAATTTCAAACTATTTCTAAGACAGGAACTGGATTCAAAGATGAAGATCTTGAAGAAAGTTCCGCTAGGCTCCGCACTAATCTCATTCCGAAACCAAAGGCATGCTATAAACATGCAGAAAAAGATAAACCTGATGTCTGGTTTGAAGCCAGTGAGGTGTGGGAGGTGAAAGTTTCAGACCTGACCATTAGCCCTGATTACCAAGCTGCAGTGGGGAAAGTACATTCGAATAAGGGAATATCTCTTCGAATGCCACGTCTTGTTCGATTCCGGCCTGATAAAGCTCCTGAACAGGCCACGTCATCTGAGCGGATTGCTGAAATGTATAATGCTCAAAAACACAATCACCCGGACAAATCCAAGAAGAAAAATTGA 2142 0.4146 MSGAKKNQPPLKKTKTHHLQSTPSKSIRTFFQPLNSPIPPKNPDTESPIKLPHQTSTSSTSSPSSSSSSTNVVEVKKRISLLKKTPSEFDHSSVAWWKKGEPVPFLFLSLAFDMIKEEKGRNAMSDIGCNVLRTVMHTTPGDLLPVVYLFSNRIAPPYQGLEMGVGKAAVIKTLAEACGRTEKDVKEHYKKLGDLGLVAQASHLSQTLQKSDALTITKVFNTFHLIAKESGKDSQKKKNNLIKSLLHASTDCEPLYLVRLLLVKLRIGYAEQTLLSALGQAAVYTEEHSKPPPGIQSPLEEATKIVKQAYSVLPDYDKIISAMLTDGVWLLAKTCNFTPGIPVEPMLSEKITSVSEALNKLRNAELICEYKYDGERAQIHYKENGSVEIYSRSSERNTGKFPDVVAAVSRLKKKNVSSFVLDCEIVAYDRKKQRILPMQVLSTRARKDVAVSNIKVDVCVFPFDLLHLNGQALLEENLKIRRKHLYASFEEESGFLQFSMSLISNDAKEIQKFLDKSVDASCEGLIFKTLDKDSTYQPSERNWLKLKKDYMKTIGDTLDLVPIGAFHGQGKRAGVYGSFLLACYDVDTQEFQTISKTGTGFKDEDLEESSARLRTNLIPKPKACYKHAEKDKPDVWFEASEVWEVKVSDLTISPDYQAAVGKVHSNKGISLRMPRLVRFRPDKAPEQATSSERIAEMYNAQKHNHPDKSKKKN* 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g1780 713 Gene3D - 355 551 - -
Mtr8g1780 713 Gene3D - 81 347 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Mtr8g1780 713 Pfam DNA ligase N terminus 104 278 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Mtr8g1780 713 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 337 553 - -
Mtr8g1780 713 CDD Adenylation_DNA_ligase_I_Euk 334 550 - -
Mtr8g1780 713 Gene3D DNA ligase/mRNA capping enzyme 374 499 - -
Mtr8g1780 713 SUPERFAMILY Nucleic acid-binding proteins 555 701 IPR012340 -
Mtr8g1780 713 MobiDBLite consensus disorder prediction 680 713 - -
Mtr8g1780 713 PANTHER DNA LIGASE 1 19 710 - -
Mtr8g1780 713 TIGRFAM dnl1: DNA ligase I, ATP-dependent (dnl1) 163 698 IPR000977 GO:0003910|GO:0005524|GO:0071897
Mtr8g1780 713 MobiDBLite consensus disorder prediction 14 35 - -
Mtr8g1780 713 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 87 335 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Mtr8g1780 713 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 369 377 IPR016059 GO:0003909
Mtr8g1780 713 ProSiteProfiles ATP-dependent DNA ligase family profile. 451 585 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Mtr8g1780 713 Pfam ATP dependent DNA ligase C terminal region 572 683 IPR012309 GO:0003910|GO:0006281|GO:0006310
Mtr8g1780 713 Pfam ATP dependent DNA ligase domain 345 547 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Mtr8g1780 713 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 19 710 - -
Mtr8g1780 713 MobiDBLite consensus disorder prediction 48 71 - -
Mtr8g1780 713 MobiDBLite consensus disorder prediction 1 71 - -
Mtr8g1780 713 CDD OBF_DNA_ligase_I 555 700 - -
Mtr8g1780 713 Gene3D - 552 712 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g1780 Mtr-Chr8 26825431 26832782 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g1780 74 706 Core DNA Replication Machinery Family AT1G08130 62.107 0.0 850
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g1780 K10747 - gmx:100783155 900.968