Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g1779 ATGGATACGAAGAAGGAGAAGCAACAAGGGAATCAAGAATCGTCTACGAAGAAGGAGCGGCATATTGTGACTTGGACTCAAGAGGAGGATGATATACTAAGAGAACAGATTGGAAATCATGGAACTGAAAATTGGGCAACTATTGCATCCAAATTCAAGGACAAAACTACAAGACAATGCAGAAGAAGATGGTACACTTATTTGAATGTTAATTTCAAGAAAGGTGGATGGACACCAGACGAAGATATCCTCTTATGTGAGGCTCAAAAAATATTTGGAAACAGATGGACAGAAATAGCAAAGGTGGTTTCAGGCAGAACGGATAATGCCGTAAAAAATCGTTTCTCCACACTCCACAAGAAGAGGGGAAAAAATGACATTGATTCAAATAGCAAGAGGAATATTTCCTATCAAGGTTATAATACAGATGCAATGTCAGAATCTGCCATGCCAGTTAAAAGAACGAGGACGGCCCATATCCCTGATGATGCAAAAATGATCAACATTGGAGACAGATCACATTTGCGAAATGCAATTTCAATAAATCAGCAACCAAGAGCACCACTTGCCGAATTAGCTCAACAATCAAATAATGTGAACAATTTTCCAGACAGGCATCATGTTTCCAATGACAAGTTCAACAGTTCCGGCCGAAATAACAAATATGAACTCAAAAAGGATGATCCGAAGATAAGTGCATTGATTCAAATAATTGATTCAGAGAACATGGAAAGAGTATGGAAGCCACTTCTAGAGTTTCTGAGCCAAACAGATATCATTGGAGAAAAAATTGCAGTTTTACAGCTTGTAAGTCATACAGTCAAGGAGTTTAAGAGTAGCAATGAGAGAGGCCATTCCCGCTTGAGGCAAATAAAACCAGACAAGGACTGCTCAGGAAGTTCTGAATACAGTACAGGATTAACTCTGCAACATAAGTCAACTTGTACTGGTGATAATTTGGAAAGCGCATTGAATCAGGATACTGGAACTGAAATTCAAGCTACACAACTTGGGGTTAAAAAAGAAGTATGTGAAGGTGTGAAGGAGGTTCTTTCTACTGGAAAAGTGGAACAAGATACGATACCAAACTGTGATGAACAGATAATTGCCTCGCCAAGAATGGAGTGTTCCCCTCTTCAAGTGACTCCTATTTTCAGATCCTTGGCTGAAGGAATTCCAACCCCAGAATTTACAGACAGTGAAAAGAGCTTCCTAAGGAAAACACTGGGAGTGGAGTCTCCATCTATCAGTACCAATGTCAACCCATACAAACCGCCACCGTGCGTAAGAGCCCTTCAATATAATCCATGA 1311 0.3989 MDTKKEKQQGNQESSTKKERHIVTWTQEEDDILREQIGNHGTENWATIASKFKDKTTRQCRRRWYTYLNVNFKKGGWTPDEDILLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLHKKRGKNDIDSNSKRNISYQGYNTDAMSESAMPVKRTRTAHIPDDAKMINIGDRSHLRNAISINQQPRAPLAELAQQSNNVNNFPDRHHVSNDKFNSSGRNNKYELKKDDPKISALIQIIDSENMERVWKPLLEFLSQTDIIGEKIAVLQLVSHTVKEFKSSNERGHSRLRQIKPDKDCSGSSEYSTGLTLQHKSTCTGDNLESALNQDTGTEIQATQLGVKKEVCEGVKEVLSTGKVEQDTIPNCDEQIIASPRMECSPLQVTPIFRSLAEGIPTPEFTDSEKSFLRKTLGVESPSISTNVNPYKPPPCVRALQYNP* 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g1779 436 ProSiteProfiles Myb-like domain profile. 69 119 IPR001005 -
Mtr8g1779 436 MobiDBLite consensus disorder prediction 1 20 - -
Mtr8g1779 436 CDD SANT 77 118 IPR001005 -
Mtr8g1779 436 ProSiteProfiles Myb-like domain profile. 25 68 IPR001005 -
Mtr8g1779 436 PANTHER TRANSCRIPTION FACTOR MYB88 2 236 - -
Mtr8g1779 436 PANTHER TRANSCRIPTION FACTOR MYB88 273 433 - -
Mtr8g1779 436 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 17 72 IPR017930 -
Mtr8g1779 436 Gene3D - 76 143 - -
Mtr8g1779 436 CDD SANT 24 68 IPR001005 -
Mtr8g1779 436 SUPERFAMILY Homeodomain-like 21 115 IPR009057 -
Mtr8g1779 436 Gene3D - 14 73 - -
Mtr8g1779 436 MobiDBLite consensus disorder prediction 281 296 - -
Mtr8g1779 436 Pfam Myb-like DNA-binding domain 25 85 - -
Mtr8g1779 436 MobiDBLite consensus disorder prediction 205 222 - -
Mtr8g1779 436 PANTHER MYB PROTEIN-RELATED 2 236 - -
Mtr8g1779 436 PANTHER MYB PROTEIN-RELATED 273 433 - -
Mtr8g1779 436 MobiDBLite consensus disorder prediction 199 222 - -
Mtr8g1779 436 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 73 123 IPR017930 -
Mtr8g1779 436 SMART sant 73 121 IPR001005 -
Mtr8g1779 436 SMART sant 21 70 IPR001005 -
Mtr8g1779 436 MobiDBLite consensus disorder prediction 281 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g1779 Mtr-Chr8 26813138 26822228 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g1779 13 289 MYB Transcription Factor Family AT2G02820 46.006 7.34e-82 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mtr8g1779 Myb_DNA-bind_6 8.7e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g1779 K09422 - gmx:100807667 459.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g1779 8 26813138 26822228 Mtr8g1779 8 26813138 26822228 ECH
Mtr8g1779 8 26813138 26822228 Mtr5g1580 5 17035153 17041250 PCT