Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g1776 ATGTCTAGCAGAAGATCTCGTTCAAGACAATCTGGTGTTTCCACTGAGATCTCTGATGCTCAAATTAATGATCTCGTCACCAAGTTACAACAACTTGTCCCTGAACTCTCAAGGCGTTCCCATAAGGTTTCAGCTGCTAAGATATTGCAAGAGACTTGCAATTACATCAAAAACTTGCATAGAGAGGTTGATGATCTTAGTGACCGATTGTCACAACTTTTGGACACCATAGACCCTAACAGTGCTCAAGCAGCTATCATTAGGAGCTTACTTATGTGA 279 0.4122 MSSRRSRSRQSGVSTEISDAQINDLVTKLQQLVPELSRRSHKVSAAKILQETCNYIKNLHREVDDLSDRLSQLLDTIDPNSAQAAIIRSLLM* 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g1776 92 Pfam Helix-loop-helix DNA-binding domain 21 59 IPR011598 GO:0046983
Mtr8g1776 92 CDD bHLH_AtPRE_like 17 76 - -
Mtr8g1776 92 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 6 59 IPR011598 GO:0046983
Mtr8g1776 92 PANTHER TRANSCRIPTION FACTOR PRE6 1 92 - -
Mtr8g1776 92 Coils Coil 56 76 - -
Mtr8g1776 92 PANTHER TRANSCRIPTION FACTOR PRE 1 92 IPR044293 GO:0006355|GO:0040008|GO:0046983
Mtr8g1776 92 Gene3D - 4 88 IPR036638 GO:0046983
Mtr8g1776 92 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 21 83 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g1776 Mtr-Chr8 26723975 26726283 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g1776 1 92 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47710 68.085 1.12e-36 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mtr8g1776 HLH 5.8e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g1776 - - gmx:100791371 140.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g1776 8 26723975 26726283 Mtr8g1776 8 26723975 26726283 ECH
Mtr8g1776 8 26723975 26726283 Mtr3g0948 3 14824982 14826514 ECH
Mtr8g1776 8 26723975 26726283 Mtr7g0161 7 2630061 2633118 ECH
Mtr8g1776 8 26723975 26726283 Mtr6g0277 6 3334846 3337859 ECH