Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g1773 ATGGCTGATCTTCAGAAAGGCGACAGTAGGGATATCGAGCAGGCAATTACATCTCTTAAGAAAGGTTCATATCTTCTAAAGTATGGGCGAAGAGGGAAGCCAAAGTTCTGCCCTTTTAAGCTTTCCAATGATGAGTCTCTACTCATATGGTACTCTGGCAAGGAAGAAAAAAAAGTTAAGCTCAGTACTGTTTCAAAGATCATTCCTGGGCAGCGAACTGCAACATTTCAGCGGTATCCCCGACCTGAAAAGGAGTATCAGTCATTTTCTCTTATATACAATGATCGGTCCTTGGATTTGATCTGCAAGGACAAAGATGAAGCTGAAATCTGGTTTGCTGGTCTGAAAGCATTAGTTACCAGAGGTAACTATCGCAAGTGGCGATTTGAAACAAGAGCTGAAAGTCTGTATTCTGAAAGTCCAAAGTCTGGCACAAGAAGATCTACTCCATATACACCATTTGACCCTGGAGATGTCGACGGAATTGCTATTCAAAATTCTTCGCCAAATAAATGGGTAAAGGCTTTCTCTGAAATTATTTCATACACTGCGCCTACCAATAGCTCCAGTCAACCTGAATCAATTACCAATTTCTCTATATCCTCTGAGTCCGTGGATAACTTGAGCACTCGAAATTCTGCATCTGAGGCAATTCGAGTTAGTCTATCCAGTGCTGTAAGTTCATCCAGTCAGGGTTCTTGTAATGAAGATTTTGATGCTTTAGGTGATGTTTTTATTTGGGGAGAAGGTACCAATGATGGAATTCTTGGTGGTGGTCTGCGTAGAGTTGGAAACCTATCTACTTCGGAGATGGATGCATTCCTTCCCAAGGCATTGGAATCAAAAGTGGTTCTCGATGTTCATAGTATTGGATGTGGCTATAAACACGCTGTTTTAGTTACCAAGCAGGGAGAAATGTTTAGCTGGGGCGAGGAGTCAGGAGGTAGGCTTGGACATGGTGCAGAAGTGGACGTTTTGCACCCTAAGCTCATTAATACTCTTAATGGCATGAACATTGAGTTAGTAGCATGTGGAGAATATCATACTTGCGCTGTTACTTATTCTGGGGATCTTTATACCTGGGGTGATGGTACTCACAACTCTGGGTTACTTGGGCATGGGAATGAAGTTAGTCACTGGATTCCTAAGAAAGTAAGTGGTGCATTGGAAGGATTACGTGTATCATATGTGTCGTGCGGACCTTGGCACACAGCTATTGTTACATCAGCTGGACAGTTGTTTACATTTGGTGATGGAACTTTTGGTGCCTTAGGCCATGGAGATCATAGCAGCTCAAATATTCCTCGGGAAGTAGAAACTTTGAAAGGGTTGAGAGCAACCAGGGTTTCATGTGGTGTTTGGCACACTGCTGCAGTTGTTGAGGTAATAAATGAATCTGTGGAATCTTCTAGGCAGTCATCTAGTGGAAGACTGTTCACCTGGGGGGATGGAGATAAAGGCCAACTAGGAGATGTTGATAAGAAACCTAGACTACTTCCCGTGTGTGTAACTGAATTGGCTAATGAAAACATTTGTCGTGTAGCTTGTGGCAACAGTCTTACAGTTGCATTGACAACATCAGGACATGTATATACAATGGGAAGTACAGCTTACGGACAACTTGGTTGTCCTGCAGCAAGTGGGAAGGTCCCTACACGTGTTGAAGATAAAATTGCTGACAGTTTCGTAGAAGATATTGCCTGTGGTTCGTATCATGTTGCAGTCCTGACTTCCAAGGCAGAGGTCTACACATGGGGAAAGGGTTTAAATGGGCAATTAGGTCATGGTGACAATGGTCACAGGAATAAGCCCACACTTGTCGAGTTTTTAAAGGATAAGCAAGTGAAGAGTGTTTTTTGTGGTTCAAACTTTACTGCTGTTGTTTGCCTTCATAAATGGGTACCGAGTGTTGATCATTCTGCATGTTCAGGCTGTCGTAATCCATTTAACTTCAGAAGAAAACGTCATAATTGTTACAACTGTGGACTTGTTTTTTGCAACTCATGCACCAGCAAGAGATCTATGAGAGCTTCCCTTGCTCCAAATACCAACAAGACATATCGTGTTTGTGATGACTGTTATTATAAACTTCAGAAAGCTGCTGAATCAGTAAACTTGCCAAGTCCTAGCTCGAGAAGTGTCGGTTTGCAAGACAGTAAGGCCGCTAAAACACAGGGAACATTATTAAGACTTTCTTCGTTTGGTTCTAATGTTCAATCCGAAAGCAGCCACTCAAAGCTTCCAGAATCACACGATAGCTATATATTTCCAGTTTTGAATGGAAAACTACAGCTGCGGGTTGTTTCAAAATCATCAAACTCTCCTTCCGGGGAATCTAGGAAATACCAGTCTGTTTCTGAGTTTGCTCCACGAATATCTTGTCAGTCAACCTCTCCAGTTTCATCAAAGTCAAGTCCACGACAATCCTGTGAAGATATTATGCAGTCTGATTTAAAACACAGAAATGATATTCTAAGTCACGAAGTTATTAGTTTAAAAGCACAGGTTGAAGATCTTACTCAGAAGTCAAAAAGTCTAGAGGCTGAACTTGAGAGAACGTCAAAGCAATTGAAGGAAGTGACTGCAGTAGCTGCAGATGAAGCTGGAAAGTGTAAATCTGCAAAAGAGGTTATAAAGTCGTTGAAAACTCAGTTGAAGGAAATGATGCAAAGATTACCAGAAGTACACAATGCTGACTCAAGCATAGATTCCTATGTTGAGACCACTAATAGTACTGTAGATCAATCCTTAGATGAGAGTCACATAACAAACACTATCACTCCCCAAAACGAAAGTGGCAGCAATGCAGAAAATATGGTATATCCTAATGGTGCCACAGCACAAAATGGAAAGGCAGAATGGGTTGTGCAAGATGAACCAGGTGTGTACGTAAGTTTGTCCTCCCTTCCAGGTGGTGGTAATGAACTTAAGCGCGTTCGCTTCAGTCGAAGGCATTTCACAGAACAAGAAGCTGAAAAGTGGTGGGCTGAAAATGGTACCAAAGTATTGGAGCGACACAATGTAGTTGCCTTGTAG 3036 0.4203 MADLQKGDSRDIEQAITSLKKGSYLLKYGRRGKPKFCPFKLSNDESLLIWYSGKEEKKVKLSTVSKIIPGQRTATFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAEIWFAGLKALVTRGNYRKWRFETRAESLYSESPKSGTRRSTPYTPFDPGDVDGIAIQNSSPNKWVKAFSEIISYTAPTNSSSQPESITNFSISSESVDNLSTRNSASEAIRVSLSSAVSSSSQGSCNEDFDALGDVFIWGEGTNDGILGGGLRRVGNLSTSEMDAFLPKALESKVVLDVHSIGCGYKHAVLVTKQGEMFSWGEESGGRLGHGAEVDVLHPKLINTLNGMNIELVACGEYHTCAVTYSGDLYTWGDGTHNSGLLGHGNEVSHWIPKKVSGALEGLRVSYVSCGPWHTAIVTSAGQLFTFGDGTFGALGHGDHSSSNIPREVETLKGLRATRVSCGVWHTAAVVEVINESVESSRQSSSGRLFTWGDGDKGQLGDVDKKPRLLPVCVTELANENICRVACGNSLTVALTTSGHVYTMGSTAYGQLGCPAASGKVPTRVEDKIADSFVEDIACGSYHVAVLTSKAEVYTWGKGLNGQLGHGDNGHRNKPTLVEFLKDKQVKSVFCGSNFTAVVCLHKWVPSVDHSACSGCRNPFNFRRKRHNCYNCGLVFCNSCTSKRSMRASLAPNTNKTYRVCDDCYYKLQKAAESVNLPSPSSRSVGLQDSKAAKTQGTLLRLSSFGSNVQSESSHSKLPESHDSYIFPVLNGKLQLRVVSKSSNSPSGESRKYQSVSEFAPRISCQSTSPVSSKSSPRQSCEDIMQSDLKHRNDILSHEVISLKAQVEDLTQKSKSLEAELERTSKQLKEVTAVAADEAGKCKSAKEVIKSLKTQLKEMMQRLPEVHNADSSIDSYVETTNSTVDQSLDESHITNTITPQNESGSNAENMVYPNGATAQNGKAEWVVQDEPGVYVSLSSLPGGGNELKRVRFSRRHFTEQEAEKWWAENGTKVLERHNVVAL* 1012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g1773 1011 Pfam Transcription factor regulating root and shoot growth via Pin3 951 1006 IPR013591 -
Mtr8g1773 1011 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 476 527 IPR000408 -
Mtr8g1773 1011 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 14 1005 - -
Mtr8g1773 1011 Coils Coil 822 863 - -
Mtr8g1773 1011 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 290 300 IPR000408 -
Mtr8g1773 1011 Gene3D - 181 366 IPR009091 -
Mtr8g1773 1011 Gene3D - 466 629 IPR009091 -
Mtr8g1773 1011 Gene3D - 367 465 IPR009091 -
Mtr8g1773 1011 Pfam Pleckstrin homology domain 13 119 IPR001849 -
Mtr8g1773 1011 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 636 698 IPR017455 -
Mtr8g1773 1011 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 411 462 IPR000408 -
Mtr8g1773 1011 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY WITH FYVE ZINC FINGER DOMAIN-CONTAINING PROTEIN 14 1005 - -
Mtr8g1773 1011 Pfam Transcription factor BRX N-terminal domain 866 893 IPR027988 -
Mtr8g1773 1011 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 580 631 IPR000408 -
Mtr8g1773 1011 SUPERFAMILY FYVE/PHD zinc finger 632 705 IPR011011 -
Mtr8g1773 1011 CDD PH_PLC_plant-like 10 120 - -
Mtr8g1773 1011 SUPERFAMILY RCC1/BLIP-II 241 633 IPR009091 -
Mtr8g1773 1011 SUPERFAMILY PH domain-like 11 119 - -
Mtr8g1773 1011 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 356 410 IPR000408 -
Mtr8g1773 1011 SMART fyve_4 628 699 IPR000306 GO:0046872
Mtr8g1773 1011 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 304 355 IPR000408 -
Mtr8g1773 1011 Coils Coil 871 891 - -
Mtr8g1773 1011 Pfam Regulator of chromosome condensation (RCC1) repeat 304 352 IPR000408 -
Mtr8g1773 1011 Pfam Regulator of chromosome condensation (RCC1) repeat 527 576 IPR000408 -
Mtr8g1773 1011 Pfam Regulator of chromosome condensation (RCC1) repeat 581 628 IPR000408 -
Mtr8g1773 1011 Pfam Regulator of chromosome condensation (RCC1) repeat 411 459 IPR000408 -
Mtr8g1773 1011 Pfam Regulator of chromosome condensation (RCC1) repeat 355 406 IPR000408 -
Mtr8g1773 1011 Pfam Regulator of chromosome condensation (RCC1) repeat 475 524 IPR000408 -
Mtr8g1773 1011 Pfam FYVE zinc finger 632 698 IPR000306 GO:0046872
Mtr8g1773 1011 PRINTS Chromosome condensation regulator RCC1 signature 306 322 IPR000408 -
Mtr8g1773 1011 PRINTS Chromosome condensation regulator RCC1 signature 356 372 IPR000408 -
Mtr8g1773 1011 PRINTS Chromosome condensation regulator RCC1 signature 397 413 IPR000408 -
Mtr8g1773 1011 PRINTS Chromosome condensation regulator RCC1 signature 413 427 IPR000408 -
Mtr8g1773 1011 PRINTS Chromosome condensation regulator RCC1 signature 517 535 IPR000408 -
Mtr8g1773 1011 PRINTS Chromosome condensation regulator RCC1 signature 575 596 IPR000408 -
Mtr8g1773 1011 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 449 459 IPR000408 -
Mtr8g1773 1011 Gene3D - 10 126 IPR011993 -
Mtr8g1773 1011 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 242 303 IPR000408 -
Mtr8g1773 1011 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 630 711 IPR013083 -
Mtr8g1773 1011 MobiDBLite consensus disorder prediction 925 944 - -
Mtr8g1773 1011 ProSiteProfiles BRX domain profile. 952 1007 IPR013591 -
Mtr8g1773 1011 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 528 579 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g1773 Mtr-Chr8 26613097 26622752 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g1773 949 1008 Major Intrinsic Protein MIP AT1G31880 51.667 7.08e-16 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g1773 - - lang:109355968 1364.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g1773 8 26613097 26622752 Mtr8g1773 8 26613097 26622752 ECH