Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g1747 ATGGACATCACCTCAAGAAACATAGATGCAGATTCTCAAATACAACCAAACATAACCTTAAAGTCTTCACCTTTCACAAACGGCACACATAAACGCCAAGTTACAGCCACAACCACCACAAACACCACTACTCCACCACCACCACCACCGCCACAGCAACAACCACCATCATCATCCATGGTTGTTTCTTACAAAGAATGTCTCAAAAATCATGCTGCATCCCTAGGTGGACATGCACTTGATGGATGTGGTGAATTCATGCCACCATCATCTCTCAATCCCAATGACCCTAGATCCCTCAAATGTGCTGCTTGTGGCTGTCACCGGAATTTCCACCGCCGTGAGCCACAAGAGCATATCCTCACCACGACCACTTCCACCACCGCTACGGCAACAGCCAGCGCGAAAAACAGTCCACCTTTTCTTAACTGTATCTACACAACACCTTCAACAACAGTTCCACCACCACAACCACCACCGCCGTTACCACTGCCACACCGTGGTCCAATTAGTCAAAGCACAAGCCCAAGTCAAAGTACAAGCCCAAGTCATAGCCCAAGTCCAATTTCAAGCCCATCATCACCACCACCACTCTCACATTTACCACCTTCTTATCATCACTCTTCAGCTCCTCACATGCTTTTAGCTCTTGGTGGAAATGCTTATTCAACACCACCACAACACTCTGATCATGATCAACACCACCACCACCATCAAAACCATCTTCAAAGAAATCTCAATTTTGCTTCATCTGTTGTTAAGCTTGAGAGCCACAACAACAACAACAGTCACAACAACACAAGTAGTGGGAAAAAGAGGTACAGGACAAAATTCAGCAAGGAGCAGAAAGAGAAGATGCATGGTTTTTCTGAGAAATTGGGTTGGAAAATGCAAAAGAGTGATGATGGTTTGGTTCAGAAATTCTGCAATGAGATTGGTGTTTCTAGAGGAGTTTTCAAAGTTTGGATGCATAACAACAAGAATAATAGCTTGAGGAAGAAATCAGAATCTGATGTTGGAATTGGAATTGCTACTCAAATTGCTACTCAAAATGATGATAAGAACAATGTTGGTAATGGTAATGATGATGCTTCCAACAATGTCATTCATCATATGAATGAAGATCATGGGTGTGTCAATGTTCATGTTTCTTCTGTTAATGGTTTATCTTCTTAA 1176 0.4286 MDITSRNIDADSQIQPNITLKSSPFTNGTHKRQVTATTTTNTTTPPPPPPPQQQPPSSSMVVSYKECLKNHAASLGGHALDGCGEFMPPSSLNPNDPRSLKCAACGCHRNFHRREPQEHILTTTTSTTATATASAKNSPPFLNCIYTTPSTTVPPPQPPPPLPLPHRGPISQSTSPSQSTSPSHSPSPISSPSSPPPLSHLPPSYHHSSAPHMLLALGGNAYSTPPQHSDHDQHHHHHQNHLQRNLNFASSVVKLESHNNNNSHNNTSSGKKRYRTKFSKEQKEKMHGFSEKLGWKMQKSDDGLVQKFCNEIGVSRGVFKVWMHNNKNNSLRKKSESDVGIGIATQIATQNDDKNNVGNGNDDASNNVIHHMNEDHGCVNVHVSSVNGLSS* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g1747 391 MobiDBLite consensus disorder prediction 1 62 - -
Mtr8g1747 391 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 271 328 IPR006455 -
Mtr8g1747 391 Pfam ZF-HD protein dimerisation region 62 116 IPR006456 -
Mtr8g1747 391 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 64 115 IPR006456 -
Mtr8g1747 391 MobiDBLite consensus disorder prediction 125 243 - -
Mtr8g1747 391 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 9 47 337 - -
Mtr8g1747 391 SUPERFAMILY Homeodomain-like 258 329 IPR009057 -
Mtr8g1747 391 MobiDBLite consensus disorder prediction 168 187 - -
Mtr8g1747 391 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 47 337 - -
Mtr8g1747 391 MobiDBLite consensus disorder prediction 151 167 - -
Mtr8g1747 391 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 64 115 IPR006456 -
Mtr8g1747 391 MobiDBLite consensus disorder prediction 1 41 - -
Mtr8g1747 391 MobiDBLite consensus disorder prediction 125 150 - -
Mtr8g1747 391 MobiDBLite consensus disorder prediction 188 202 - -
Mtr8g1747 391 Gene3D - 256 332 - -
Mtr8g1747 391 MobiDBLite consensus disorder prediction 42 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g1747 Mtr-Chr8 26230735 26232432 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g1747 62 328 ZF-HD Transcription Factor Family AT3G28920 43.446 2.08e-51 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Mtr8g1747 ZF-HD_dimer 5.5e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g1747 - - mtr:MTR_8g467340 605.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g1747 8 26230735 26232432 Mtr8g1747 8 26230735 26232432 ECH