Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g1746 ATGAGTGATCATGTGGTGTTGTTTGTGGATCGATTAATGCGTCCGATGCCTGTTGAGCCGTTGGCTCAACATCCTGCTCAGCCTGCTCCTGAGCCGATGCCGCCGGTGATTCAATCACCGGCAGGGCCTTCGGGTTCTTCGACAGCGGATGATGATGTCGGCGAGGACGAGCCGTTGTTGCAGATGGAGATGGCTGAGTGTAGGATTTGTCAGGAGGAGGATGGTATTGATAATCTGGAGAATCCTTGCGCCTGTAGCGGTAGTCTTAAGTATGCACATAGAAAATGTGTCCAACGCTGGTGCAACGAAAAAGGAGACACAACTTGTGAAATTTGTCATAAGTCCTATGAACCTGATTATACTGCTCCACCACCTCGTCCACATCCTGAAGAAACCACCATCGATATAGGTGGAGGCTGGACACTCTCTGGCACACCTTTGGACTTGCGTGATCCTCGACTGTTGGCAATTGCAGAGGCAGAACGTCAATTCTTCGAAGCTGAATATGATGGATATGCTGCTTCTAACGCCAATGGAGCTGCATTTTGCCGTTCAGCTGCTCTCATTTTAATGGCTCTCTTACTCTTGAGGCACGCACTTTCTGTCACGGATGCTGATGCTGAAGATGATCCATCTATGTTTTTCTCTCTTTTCTTGCTTCGAGCCGCTGGCTTTCTTTTACCTTGCTATATCATGGCTTGGGCAATCAGTATTTTGCAACGACGGCGACAAAGACAAGAGGCTGCAGCATTGGCGGCAACCCAAGTTGCTTTCGTGCTACAATCTGGGCAGCATAGGGGACTGCAATTTGCCATAACACCAGCATCTAATCCACGCCCACACCAAGAACAAGTGTAG 858 0.4918 MSDHVVLFVDRLMRPMPVEPLAQHPAQPAPEPMPPVIQSPAGPSGSSTADDDVGEDEPLLQMEMAECRICQEEDGIDNLENPCACSGSLKYAHRKCVQRWCNEKGDTTCEICHKSYEPDYTAPPPRPHPEETTIDIGGGWTLSGTPLDLRDPRLLAIAEAERQFFEAEYDGYAASNANGAAFCRSAALILMALLLLRHALSVTDADAEDDPSMFFSLFLLRAAGFLLPCYIMAWAISILQRRRQRQEAAALAATQVAFVLQSGQHRGLQFAITPASNPRPHQEQV* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g1746 285 MobiDBLite consensus disorder prediction 21 39 - -
Mtr8g1746 285 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 54 123 IPR013083 -
Mtr8g1746 285 Pfam RING-variant domain 67 112 IPR011016 GO:0008270
Mtr8g1746 285 Pfam Protein of unknown function (DUF3675) 118 236 IPR022143 -
Mtr8g1746 285 SMART ringv_2 66 113 IPR011016 GO:0008270
Mtr8g1746 285 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED 1 272 - -
Mtr8g1746 285 CDD RING_CH-C4HC3_MARCH 67 113 - -
Mtr8g1746 285 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 272 IPR033275 -
Mtr8g1746 285 SUPERFAMILY RING/U-box 63 117 - -
Mtr8g1746 285 ProSiteProfiles Zinc finger RING-CH-type profile. 59 119 IPR011016 GO:0008270
Mtr8g1746 285 MobiDBLite consensus disorder prediction 21 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g1746 Mtr-Chr8 26137075 26140348 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g1746 66 113 C3H Transcription Factor Family AT2G37950 45.098 1.22e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g1746 - - ahf:112734090 420.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g1746 8 26137075 26140348 Mtr8g1746 8 26137075 26140348 ECH