Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g1740 ATGGAACTTCTGCGCAACGCTTATTCAAATTCCTCAGATGAAGAAGAAGAACCCAAACGACTAAAATCATCTCACACTTCTTCATACCCACCAAAACCCTATCTCCCTTCTCCTTCTCCTTCTCTCATTCTTCCAGGTAGCTACGTTTCCAAACGACAACGCGCATCATCATCATCATCAATCTCTACTACAACTACCATTTCTTCATCACAATCCTCTTCTTTCACGCTCTCCGGTAGTATCTCAGAGGCTGATATACCCCATAAGATTGTAGCATTGTTGAAAAGTAAAGCAAAGGGTCATCAAAACCTGAACTCGATACCTGACAAGCTATCTGCAACTCTATCTGGACATACTAGAGCTGTCAATGCTATACATTGGTCATCAACTCATGCTCACCTCCTTGCATCTGCTGGGATGGACAATGCGGTTTTCATATGGAACGTATGGAGCAATGATAAGAAGAAAGCATGTGCGCTAAATTTCCACAATGCAGCAGTGAAAGATGTGAAATGGTCTCAACAAGGGCACTTCTTACTTTCTTGTGGATATGATTGCACATCAAGGTTGATTGATGTTGAAAAGGGGATGGAAACTCAGGTTTTCAGAGAAGATCAAATTGTTGGAGTTATAAAGTTCCATCCAGACAATTCAAGTCTCTTCCTTTCTGGGGGATCAAAGGGCCATATCAAGCTATGGGATATCAGAACTGACAAAGCTGTGCATAACTATAATCGAAATTTAGGTTCTATTCTAGATGTTGAGTTTACAACAAATGGGAAGCAATTCATTTCTTCAAGTGATGTATCTGGGAGCAATATCAGTGAGAATTCTATTATCGTTTGGGATGTGTCAAGACAGGTACCATTGTCTAATCAGGTTTATGTGGAAGCTTATACTTGTCCTTGCATTAGAAGCCACCCCTTTGATCCAGTTTTTGTTGCGCAATCAAACGGGAATTATGTTGCAATCTTTAGTACCACCCCGCCATACAGACTGAACAAATATAAGAGATATGAGAACCATGGGGTTTCTGGGTTCCCAATTAAGTGCAATTTCAGCTTAGATGGGAAGAAGCTTGCATCTGGCTCTTCAGATGGATCTATTTACCTTTATGATTATCAGTCATCCAAAGTTTTGAAGAAAATAAAGGCCTTTAACCAAGCTTGCATGGACATTGCCTTCCACCCAGTTTTGCCTAATGTTATTGCTTCATGCTCATGGGATGGAAATATTTTGGTATTTGAGTAG 1251 0.4037 MELLRNAYSNSSDEEEEPKRLKSSHTSSYPPKPYLPSPSPSLILPGSYVSKRQRASSSSSISTTTTISSSQSSSFTLSGSISEADIPHKIVALLKSKAKGHQNLNSIPDKLSATLSGHTRAVNAIHWSSTHAHLLASAGMDNAVFIWNVWSNDKKKACALNFHNAAVKDVKWSQQGHFLLSCGYDCTSRLIDVEKGMETQVFREDQIVGVIKFHPDNSSLFLSGGSKGHIKLWDIRTDKAVHNYNRNLGSILDVEFTTNGKQFISSSDVSGSNISENSIIVWDVSRQVPLSNQVYVEAYTCPCIRSHPFDPVFVAQSNGNYVAIFSTTPPYRLNKYKRYENHGVSGFPIKCNFSLDGKKLASGSSDGSIYLYDYQSSKVLKKIKAFNQACMDIAFHPVLPNVIASCSWDGNILVFE* 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g1740 416 ProSitePatterns Trp-Asp (WD) repeats signature. 135 149 IPR019775 -
Mtr8g1740 416 SUPERFAMILY WD40 repeat-like 100 415 IPR036322 GO:0005515
Mtr8g1740 416 ProSiteProfiles Trp-Asp (WD) repeats profile. 115 157 IPR001680 GO:0005515
Mtr8g1740 416 MobiDBLite consensus disorder prediction 9 23 - -
Mtr8g1740 416 ProSiteProfiles Trp-Asp (WD) repeats profile. 353 382 IPR001680 GO:0005515
Mtr8g1740 416 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 32 416 - -
Mtr8g1740 416 MobiDBLite consensus disorder prediction 1 75 - -
Mtr8g1740 416 SMART WD40_4 195 234 IPR001680 GO:0005515
Mtr8g1740 416 SMART WD40_4 376 416 IPR001680 GO:0005515
Mtr8g1740 416 SMART WD40_4 334 373 IPR001680 GO:0005515
Mtr8g1740 416 SMART WD40_4 237 283 IPR001680 GO:0005515
Mtr8g1740 416 SMART WD40_4 108 148 IPR001680 GO:0005515
Mtr8g1740 416 SMART WD40_4 153 192 IPR001680 GO:0005515
Mtr8g1740 416 Pfam WD domain, G-beta repeat 162 191 IPR001680 GO:0005515
Mtr8g1740 416 Pfam WD domain, G-beta repeat 111 148 IPR001680 GO:0005515
Mtr8g1740 416 Pfam WD domain, G-beta repeat 211 234 IPR001680 GO:0005515
Mtr8g1740 416 Pfam WD domain, G-beta repeat 341 373 IPR001680 GO:0005515
Mtr8g1740 416 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 115 149 - -
Mtr8g1740 416 MobiDBLite consensus disorder prediction 43 75 - -
Mtr8g1740 416 ProSiteProfiles Trp-Asp (WD) repeats profile. 160 201 IPR001680 GO:0005515
Mtr8g1740 416 ProSiteProfiles Trp-Asp (WD) repeats profile. 201 243 IPR001680 GO:0005515
Mtr8g1740 416 Gene3D - 87 416 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g1740 Mtr-Chr8 26039902 26047047 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g1740 110 286 U-box Gene Family AT2G33340 25.275 1.99e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g1740 K24742 - gmx:100790592 628.246
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g1740 8 26039902 26047047 Mtr8g1740 8 26039902 26047047 ECH