Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g1728 ATGCCACCAGATGCAGTGGTAGACGCCAGGGAAATCCAAGAAATGGAACGGCCTTCATGGAAAGTGAGAAAAGAAGAGAAAGAGGGTCTTGTTCAAGATAATGGAGGTCCTTTTGAGATCAAAGCAAAGCTATTTCCAAATGAAGTTCCACCAATCACAGAAGATACATCAGAAACAGCTAGTGCACTTTGGGACATATTTCGAAGAGAAGATACTGCAAAGTTAGAAGCATATCTTAGAAAATATTCCAAAGAATTTAGGCATACTTATTGTTCTCCAGTAAAAGAGGTTGTCCATCCTATTCATGACCAATGTTTTTATTTGACTTTTGAGCATAAGAAGCTGAAGGAAGAGTTTGGTGTAGTTCCTTGGACTTTTGAGCAGAAGCTTGGTGAAGCAGTATTTATACCTGCTGGATGCCCTCACCAAGTTCGAAATCTGAAGGTGTAA 450 0.3978 MPPDAVVDAREIQEMERPSWKVRKEEKEGLVQDNGGPFEIKAKLFPNEVPPITEDTSETASALWDIFRREDTAKLEAYLRKYSKEFRHTYCSPVKEVVHPIHDQCFYLTFEHKKLKEEFGVVPWTFEQKLGEAVFIPAGCPHQVRNLKV* 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g1728 149 Pfam JmjC domain, hydroxylase 53 148 IPR003347 -
Mtr8g1728 149 PANTHER TRANSCRIPTION FACTOR JUMONJI (JMJC) DOMAIN PROTEIN 22 148 - -
Mtr8g1728 149 ProSiteProfiles JmjC domain profile. 1 149 IPR003347 -
Mtr8g1728 149 SUPERFAMILY Clavaminate synthase-like 63 147 - -
Mtr8g1728 149 SMART cupin_9 7 148 IPR003347 -
Mtr8g1728 149 Gene3D Cupin 5 149 - -
Mtr8g1728 149 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 22 148 IPR045109 GO:0032454|GO:0033169
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g1728 Mtr-Chr8 25684738 25686218 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Mtr8g1728 JmjC 2.2e-12 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g1728 K15601 - mtr:MTR_8g465720 261.922