Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g1709 ATGAATAGTGTAGTTGGTAGAAAGAAGAAAAAGATAGCAAAGGGAGATCTTGCATCAGAGATAACGTCACCAGATGAGGAAGACTCACAAAAACCTTCGGCCAATGAAGAAATCGTCTCTCTACTTGTTTCCATGGGCTTTGATCATCTCCGTTGTCAGAAAGCTGCTATAAATACATCAAATGTTGGCGTGGATGCGGCATTGACTTGGTTACAGTCTCACGAGGATGATCCAGATATTGACATTCCTATTTCTGAAGGCCATGGTTCTGAAGCTTTGACAACTCTTGACCAATCAAAAGTTGATCACCTAATTATGTTCGGATTTCAAGAAGATATTGATCGAAAAGCTCTGAAAGCATCAGTAATTTTTCTTTTTATATTTCCCCCTGTGGGCTTTTGTTTCATGATATAA 414 0.3889 MNSVVGRKKKKIAKGDLASEITSPDEEDSQKPSANEEIVSLLVSMGFDHLRCQKAAINTSNVGVDAALTWLQSHEDDPDIDIPISEGHGSEALTTLDQSKVDHLIMFGFQEDIDRKALKASVIFLFIFPPVGFCFMI* 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g1709 137 MobiDBLite consensus disorder prediction 9 33 - -
Mtr8g1709 137 Pfam UBA/TS-N domain 35 71 IPR015940 -
Mtr8g1709 137 Gene3D - 31 68 - -
Mtr8g1709 137 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 33 74 IPR015940 -
Mtr8g1709 137 SUPERFAMILY UBA-like 19 85 IPR009060 GO:0005515
Mtr8g1709 137 MobiDBLite consensus disorder prediction 1 34 - -
Mtr8g1709 137 Gene3D - 69 122 - -
Mtr8g1709 137 SMART uba_6 35 73 IPR015940 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g1709 Mtr-Chr8 25269204 25270905 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g1709 15 81 C2H2 Transcription Factor Family AT1G04850 32.836 4.05e-07 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g1709 K11836 - mtr:MTR_8g464880 150.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g1709 8 25269204 25270905 Mtr8g1709 8 25269204 25270905 ECH