Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g1686 ATGCATTCATATGCTCTCCTCCATCAAACAAAGAAACATGCAGCATTTTCTTCAAGACTCGTATTTGTCATAAGTTCAGGTTTGGTAATTGTCCGAAAGGTGAACATTGTACCTAATACCTATGCTCACGGGGTTGGTGAGATAAGGCAGCCACCGCCGAATCGGAAGGAGCTAGCTGGCGCTCGCAACGAGGAATGGATGCAGTTTCTGGATGATGATCAAAAAATCATTCACAAGATGGGGCTATGCAAGAAATACTACAATGGTAAAGAATGTCCTTATGATGATAAGTGTAGTTTTCTTCATAGGCTTAGGGATGATTCTTGGAAATCAAGAGAGGCCTGTGCATTAAGCATTGGAAGTATCGGAGATGGTTCCAATTCTAATAGTTTGGAAGGCAATAGGTCTGTGAACAAGCCAGCAAGGGGCACTTACTGGAAGATTAAGGACTGTCACTATAGTCATGGAGAAGCAGAGTTACTAGTTCCTGGTGGAGGCGCTGAAGGTGAAGCTAAAGCTGAAGTTTGCATAGCAACTTCAACAAAAGCTATCATACAAACTTTATCAAATGCCTTACGAGTTTATGCCAATGATGCCCCTACTGGCATCCCAGTAAGTCTAGGTGTGGCAAAGGAAGAGGAGCAGGCTAAGAAGAAGCGTTTACTTTGGTTGAAATTAAACAAGAAGACCAATACTATATATGCTGATTGGATTGATGATTCACCTCTTATTCTACCCAACTAG 744 0.4207 MHSYALLHQTKKHAAFSSRLVFVISSGLVIVRKVNIVPNTYAHGVGEIRQPPPNRKELAGARNEEWMQFLDDDQKIIHKMGLCKKYYNGKECPYDDKCSFLHRLRDDSWKSREACALSIGSIGDGSNSNSLEGNRSVNKPARGTYWKIKDCHYSHGEAELLVPGGGAEGEAKAEVCIATSTKAIIQTLSNALRVYANDAPTGIPVSLGVAKEEEQAKKKRLLWLKLNKKTNTIYADWIDDSPLILPN* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g1686 247 PANTHER CCCH ZINC FINGER/TIS11-RELATED 40 241 IPR045877 GO:0003729
Mtr8g1686 247 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 79 102 IPR000571 GO:0046872
Mtr8g1686 247 Gene3D - 72 163 - -
Mtr8g1686 247 SUPERFAMILY CCCH zinc finger 76 106 IPR036855 GO:0046872
Mtr8g1686 247 ProSiteProfiles Zinc finger C3H1-type profile. 82 105 IPR000571 GO:0046872
Mtr8g1686 247 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 39 40 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g1686 Mtr-Chr8 24942582 24944803 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mtr8g1686 zf-CCCH 0.00017 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g1686 - - mtr:MTR_3g050390 268.47