Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g1675 ATGCAAACGATAATGGATCCCACCAAAAAGCGCAAGCTGGACGAGAACGGCTTCGGCGGCGAATCTGATCACCTAAAGCTCTCCCCCTCGGAAGGCCGCAAGCTGATCGAGCGTTTCACCCCTGACCAGCTAATCAACATCCTCCAAGACGCCGTCGTCCGCCATCCCGACGTTCTCTCCGCCGTTCGTGCAGTTGTAGACCCAGACATCTCCCGACGCAAGCTCTTCATCCGCGGCCTCGGTTGGGACACCACAACAGAGGGCCTCCGGTCACTTTTTTCAACCTACGGTGAACTCGAAGAAGCCATCGTCATCGTTGATAAGGCCACTGGGAAGTCAAAGGGTTACGGTTTTGTAACCTTCCTCCACGTGGACGGTGCTCTATTAGCTCTCCGTGAGCCTAGCAAGCGGATTGACGGGCGCGTTACTGTCACGCAGCTGGCCGCAGCAGGGAATTCAGGCTCCAACACCAACGCAGCTGACGTTGCCCAACGTAAAATATATGTATCCAATGTGCCGCCAGATCTTCCAGGGGACAAGCTTCTAGCCCACTTCTCAATTTATGGGGAGATCGAGGAAGGTCCATTGGGCTTTGATAAGCAGACAGGAAGATCCAAAGGCTTCGCTCTTTTTGTTTATAAGACACCTGAGGGGGCAAACGCTGCCGTATCAGAGCCCGTCAAGAATGTGGAGGGGCGCCAGTTAAATTGCAAGCTGGCAATAACAGATGGTGGGAAACAGCAAGGGATGCGGGGTGGCCCGGACGGGGCTCAGGGTCGTGGGAATGCTCATGGAAATGGATTGGGGATGGCTCCTGCAGCTGGGTCTGCGTCGGGTCAATATGGTGCTTCTGTGGGTATGGGTTCTTATGGTGGGTTTTCTGCTGGGCATCAGGGTCAGCCTCCAATGGGTAACCATCCTTTGAGTTCGTCTGTTGGTGGTGGTTTGTCTTCTGTTGGGAATCAGGCTCCGTCTTCAATTGGTGGAGCTGGTGGGTATGGTGGTGGTCATTATGGAGGTTACAGTGGGCCAACGGCGGCTGGCTATGGCGGTAGTGGTGGTGGTGGTGGTGGTGGTTATGGTGGAGGCAGTGGTGTGACTGGTCCAGGTGTGGGAGCCGGTGGTGGACATGGTTCTGCTGGAGGTAGTGGTGGACATGGACTTGCTTCCTTGTACAGATTACCAAGTTCAGGTGGAATGCAAGCTGGTGGATATCCTGACAGTGGACACTATAATTCATCGGGCTATCAGAATCAGCATCATCCTCCTGCTGGAGCATCGCCGGTACCAAGGGTTCAACCTGGTTCCATGTATTCAAATGTGCCTCCTTACTACTAA 1338 0.5433 MQTIMDPTKKRKLDENGFGGESDHLKLSPSEGRKLIERFTPDQLINILQDAVVRHPDVLSAVRAVVDPDISRRKLFIRGLGWDTTTEGLRSLFSTYGELEEAIVIVDKATGKSKGYGFVTFLHVDGALLALREPSKRIDGRVTVTQLAAAGNSGSNTNAADVAQRKIYVSNVPPDLPGDKLLAHFSIYGEIEEGPLGFDKQTGRSKGFALFVYKTPEGANAAVSEPVKNVEGRQLNCKLAITDGGKQQGMRGGPDGAQGRGNAHGNGLGMAPAAGSASGQYGASVGMGSYGGFSAGHQGQPPMGNHPLSSSVGGGLSSVGNQAPSSIGGAGGYGGGHYGGYSGPTAAGYGGSGGGGGGGYGGGSGVTGPGVGAGGGHGSAGGSGGHGLASLYRLPSSGGMQAGGYPDSGHYNSSGYQNQHHPPAGASPVPRVQPGSMYSNVPPYY* 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g1675 445 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 75 142 IPR000504 GO:0003723
Mtr8g1675 445 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 167 234 IPR000504 GO:0003723
Mtr8g1675 445 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 165 242 IPR000504 GO:0003723
Mtr8g1675 445 PANTHER UBP1-ASSOCIATED PROTEIN 2C 5 415 - -
Mtr8g1675 445 MobiDBLite consensus disorder prediction 303 320 - -
Mtr8g1675 445 CDD RRM_RBM24_RBM38_like 73 148 - -
Mtr8g1675 445 MobiDBLite consensus disorder prediction 407 421 - -
Mtr8g1675 445 MobiDBLite consensus disorder prediction 399 445 - -
Mtr8g1675 445 SMART rrm1_1 166 238 IPR000504 GO:0003723
Mtr8g1675 445 SMART rrm1_1 74 146 IPR000504 GO:0003723
Mtr8g1675 445 PANTHER GEO13361P1-RELATED 5 415 - -
Mtr8g1675 445 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 73 174 IPR000504 GO:0003723
Mtr8g1675 445 MobiDBLite consensus disorder prediction 7 26 - -
Mtr8g1675 445 SUPERFAMILY RNA-binding domain, RBD 156 266 IPR035979 GO:0003676
Mtr8g1675 445 SUPERFAMILY RNA-binding domain, RBD 66 148 IPR035979 GO:0003676
Mtr8g1675 445 MobiDBLite consensus disorder prediction 296 320 - -
Mtr8g1675 445 MobiDBLite consensus disorder prediction 1 26 - -
Mtr8g1675 445 MobiDBLite consensus disorder prediction 244 265 - -
Mtr8g1675 445 Gene3D - 156 273 IPR012677 -
Mtr8g1675 445 Gene3D - 60 155 IPR012677 -
Mtr8g1675 445 CDD RRM_RBM24_RBM38_like 165 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g1675 Mtr-Chr8 24766187 24790533 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g1675 161 250 C2H2 Transcription Factor Family AT2G19380 39.785 3.52e-12 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g1675 K12741 - gmx:100776220 531.176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g1675 8 24766187 24790533 Mtr8g1675 8 24766187 24790533 ECH