Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g1648 ATGGGTCGCCCACCCAGTAACGGAGGCCCTGCCTTCCGTTTCACTCAGCCCGAGGTAACGGAAATGGAAGCTATTCTATCAGAACACAACAATGCAATGCCAGCACGAGATGTTCTTCAAGCACTTGCAGACAAGTTTAGTGAATCACCCGACCGTAAAGGCAAGATTACAGTACAGATGAAACAGGTATGGAATTGGTTTCAAAATAAGCGATATGCTATAAGGGCTAAATCTAGTAAGACTCCTGCAAAGTTAAATATCACGCCCATGCCTCGGACTGATTTGACCCCAGGAAGGATAATGACTCAACCAACAGCTTCTCCTATTCCTGCTCCTTCAGCGTCAGTTCAAACAACAGCAAAGGCAGCTCCTGAAAATTCAGTTATGGAATTTGAAGCTAAATCTGGAAGAGATGGAGCATGGTATGATGTGGCTACCTTTCTATCATACAGACATTTGGAGAGCAGTGATCCGGAAGTGCTGGTGCGTTTTGCTGGTTTTGGATCCGAGGAAGATGAGTGGATTAACGTGCGAAAAAATGTCAGGCCGCGCTCTCTGCCATGTGAATCATCAGAATGTGTCGCAGTGCTCCCTGGTGATCTCATACTTTGTTTTCAGGAGGGTAAAGAGCAAGCCCTTTACTTTGATGCCCATGTCCTTGATGCTCAAAGACGGAGGCATGATGTAAGAGGTTGTCGCTGTAGATTTTTGGTTCGCTATGATCACGATCAATCTGAGGAAATCGTGCCGCTTAGGAAGATTTGTCGGAGACCTGAAACTGATTACAGATTACATCAACTTCATGCTGTGAATGATGCAGCACCCACAGATCAGCAGAAGATTGCGTTGGATCATCCAGCAAATGTTCATGGCGCGAGGGTTACTAATCCTTCTGAAATGGTGCAAAAGCAGCAGCAGATTGCAAATATTCATATAGTAACACCTGTTTTGCAAACAAATGTTTCTATACCACCACAAAGTATGAATGTGGATCCAATGAAAGCTGAAACAAAAGCTGATGTTCAAGCTGGAAATTCTGTCACTCCAAGCTCTGCCGCATTCACTGGAATCATTGCCACTAGCAGTGTTCCTGAAGTCTCTACTCAGAACCTGGCTGAAGGGAAGTAA 1128 0.4495 MGRPPSNGGPAFRFTQPEVTEMEAILSEHNNAMPARDVLQALADKFSESPDRKGKITVQMKQVWNWFQNKRYAIRAKSSKTPAKLNITPMPRTDLTPGRIMTQPTASPIPAPSASVQTTAKAAPENSVMEFEAKSGRDGAWYDVATFLSYRHLESSDPEVLVRFAGFGSEEDEWINVRKNVRPRSLPCESSECVAVLPGDLILCFQEGKEQALYFDAHVLDAQRRRHDVRGCRCRFLVRYDHDQSEEIVPLRKICRRPETDYRLHQLHAVNDAAPTDQQKIALDHPANVHGARVTNPSEMVQKQQQIANIHIVTPVLQTNVSIPPQSMNVDPMKAETKADVQAGNSVTPSSAAFTGIIATSSVPEVSTQNLAEGK* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g1648 375 Gene3D - 126 187 - -
Mtr8g1648 375 CDD homeodomain 13 75 IPR001356 GO:0003677
Mtr8g1648 375 PANTHER PROTEIN SAWADEE HOMEODOMAIN HOMOLOG 2 1 354 IPR039276 -
Mtr8g1648 375 Gene3D - 188 260 - -
Mtr8g1648 375 Gene3D - 10 86 - -
Mtr8g1648 375 ProSiteProfiles 'Homeobox' domain profile. 13 77 IPR001356 GO:0003677
Mtr8g1648 375 PANTHER PROTEIN SAWADEE HOMEODOMAIN HOMOLOG 2 1 354 - -
Mtr8g1648 375 Pfam SAWADEE domain 129 255 IPR032001 GO:0003682
Mtr8g1648 375 SMART HOX_1 7 81 IPR001356 GO:0003677
Mtr8g1648 375 SUPERFAMILY Homeodomain-like 12 78 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g1648 Mtr-Chr8 24250366 24258529 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Mtr8g1648 SAWADEE 1.6e-40 CL0049
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g1648 - - gmx:100783895 564.303