Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g1639 ATGGAGAATACCGGAGGTGTGAGAAAAGGCGCATGGACTTACAAGGAAGATGAGCTACTCAAGGCTTGCATTAACACGTACGGTGAAGGAAAATGGAATTTAGTTCCTCAGAGATCTGGATTGAATAGATGCAGAAAAAGTTGTAGATTGAGGTGGTTAAATTACTTAAGCCCCAACATCAACAGAGGAAGATTTTCTGAGGATGAAGAAGATTTGATCCTAAGGTTACACAAACTACTAGGAAATAGATGGTCATTGATTGCTGGAAGGCTTCCGGGTAGAACAGCTAATGATGTGAAGAACTATTGGCACACAAATTTGGCAAAGAAAGTGGTTTCAGAAAAGGAAGAAGAGAAAGAAAACGATAAACCTAAGGAAACCATGAAAGCTCATGAAGTTATTAAACCTCGTCCTATAACTTTGTCAAGTCATTCAAATTGGTTGAAGGGGAAAAATAGTATTCCTAGAGATCTTGATTACTCAGAGAATATGGCTTCAAATCAAATTGGTAGAGAGTGTGCTTCTACTTCAAAACCAGATCTAGGTAATGCCCCAATACCATGTGAAATGTGGTGTGACAGTTTGTGGAACTTGGGAGAACATGTAGACAGTGAGAAAATTGGGTCATGCTCTTCATTACAAGAGGAGAACTTAATGGAGTTTCCAAATGTTGATGATGACTCCTTTTGGGATTTCAACCTTTGTGATTTGAATTCTCTTTGGGATCTACCTTGA 735 0.3878 MENTGGVRKGAWTYKEDELLKACINTYGEGKWNLVPQRSGLNRCRKSCRLRWLNYLSPNINRGRFSEDEEDLILRLHKLLGNRWSLIAGRLPGRTANDVKNYWHTNLAKKVVSEKEEEKENDKPKETMKAHEVIKPRPITLSSHSNWLKGKNSIPRDLDYSENMASNQIGRECASTSKPDLGNAPIPCEMWCDSLWNLGEHVDSEKIGSCSSLQEENLMEFPNVDDDSFWDFNLCDLNSLWDLP* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g1639 244 Pfam Myb-like DNA-binding domain 9 56 IPR001005 -
Mtr8g1639 244 Pfam Myb-like DNA-binding domain 62 107 IPR001005 -
Mtr8g1639 244 ProSiteProfiles Myb-like domain profile. 4 56 IPR001005 -
Mtr8g1639 244 SMART sant 8 58 IPR001005 -
Mtr8g1639 244 SMART sant 61 109 IPR001005 -
Mtr8g1639 244 CDD SANT 64 107 IPR001005 -
Mtr8g1639 244 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 57 111 IPR017930 -
Mtr8g1639 244 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 6 213 - -
Mtr8g1639 244 Gene3D - 2 62 - -
Mtr8g1639 244 CDD SANT 11 56 IPR001005 -
Mtr8g1639 244 SUPERFAMILY Homeodomain-like 7 103 IPR009057 -
Mtr8g1639 244 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 56 IPR017930 -
Mtr8g1639 244 ProSiteProfiles Myb-like domain profile. 57 107 IPR001005 -
Mtr8g1639 244 PANTHER TRANSCRIPTION FACTOR MYB113-RELATED 6 213 - -
Mtr8g1639 244 Gene3D - 64 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g1639 Mtr-Chr8 24102937 24103911 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g1639 2 142 MYB Transcription Factor Family AT1G66370 61.644 7.24e-57 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mtr8g1639 Myb_DNA-binding 1.9e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g1639 - K09422 mtr:MTR_7g017260 341.658