Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g1629 ATGGAATCTACATGCTTTGGTTCTAATGATGAAGTCTCACTAAAGCAAAAATGGAAATCCACTACAGAAGATACGACAATCTCTAGTGGTGAAAATAACTGCTTTGATTGCAATATTTGCTTGGAATCAGCAAATGATCCTGTGGTTACACTCTGTGGTCACCTGTATTGCTGGCCATGCATATATAAGTGGCTTAATGTCCAAAGCTCTTCTGTTGAACCGGATACGCAGCCGACATGCCCGGTTTGTAAAGCCGTGATCTCCCATACTTCATTAGTCCCACTTTACGGCCGAGGGAAATCTAATTCAGAAACCGAATCCAATAAACTACAGGTTGGTTTAGGTATACCTCATCGACCACCTCCTTATAACTTAAATGCTCTGTTAACTTCAAATCGCCCATCAAATCTACGTCACGAGCAGCAACTTCATCCGAACTATTTCCAGTCACAATCGCGACCAATTCATTATCAGCACTACATCCCTCACCTTTATGGAGGTCATGGTGCCAATGGATTACATTATCTTGGTGGTGCTGCTATGACTAGTTTCGTCAATCCTGTGATGGGTTTGTTTGGGGAGATGGTGTCGACAAGGATGTTTGGTGTATCTGATGCAAATTTGTTTGCGTACCCTCGTAACGGAAGTACCAGTCCTAGAATGAGAAGGCAGGAGATGCAGATTGACAAGTCTTTGAACAGAGTTTCAATCTTTCTTCTTTGTTGTTTTATTTTGTGTCTTCTCTTGTTTTGA 753 0.4183 MESTCFGSNDEVSLKQKWKSTTEDTTISSGENNCFDCNICLESANDPVVTLCGHLYCWPCIYKWLNVQSSSVEPDTQPTCPVCKAVISHTSLVPLYGRGKSNSETESNKLQVGLGIPHRPPPYNLNALLTSNRPSNLRHEQQLHPNYFQSQSRPIHYQHYIPHLYGGHGANGLHYLGGAAMTSFVNPVMGLFGEMVSTRMFGVSDANLFAYPRNGSTSPRMRRQEMQIDKSLNRVSIFLLCCFILCLLLF* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g1629 250 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 10 147 IPR013083 -
Mtr8g1629 250 SUPERFAMILY RING/U-box 33 96 - -
Mtr8g1629 250 SMART ring_2 37 83 IPR001841 -
Mtr8g1629 250 ProSitePatterns Zinc finger RING-type signature. 52 61 IPR017907 -
Mtr8g1629 250 Pfam Zinc finger, C3HC4 type (RING finger) 37 83 IPR018957 GO:0046872
Mtr8g1629 250 ProSiteProfiles Zinc finger RING-type profile. 37 84 IPR001841 -
Mtr8g1629 250 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RMA3-LIKE 6 250 - -
Mtr8g1629 250 CDD RING-HC_AtRMA_like 35 85 - -
Mtr8g1629 250 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 6 250 IPR045103 GO:0005783|GO:0006511|GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g1629 Mtr-Chr8 23864677 23867060 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g1629 15 236 C3H Transcription Factor Family AT4G27470 47.368 2.03e-52 168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g1629 K10666 - gmx:100817526 338.961
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g1629 8 23864677 23867060 Mtr8g1629 8 23864677 23867060 ECH