Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g1605 ATGATGAATGGATTAAGGAACAAAGTTTCTGCTGAACACAAAACGGACCTTGTTAATCACAGACCATCCAAGAAGCAAAAGATTACTCCAAAGTTGGACGACTCTATGATGAATGGATTAAGCAACAAAGTTTATGCTCAAATCAAAAAGGAACTTGTTGATCACGGACCATCCAAGAAGCAAAAGAATACTTTGAAGCTGGACGGCTCTATGATGAATGGATTAAGGAACAAAGTTTCTGCTGAACACAAAATGGACCTTGTTAATCACAGACCATCCAAGAAGCAAAAGATTACTCCAAAGTTGGACCAATCTATGTTCGATGGATTAAGCAACAACTTTTCTGCTCAAGTCCAAAAGGACCTTGGTGATGATGGACCATCGAAAAAGCAAAAGAGTACTCCAAAGATTCCTTCAATGTCACTTGATGAGTACTTTAAAAGGAGTAGGGAGCAACTTGAAGCAGAGGAGTCTGAAAATGAAGAACTTGACAGGGAACAAGAAGTTGAGGGTGAGATAAACTATGAAAATGGTGATGGTGATAATTCAATGGAAGGTAACAGCATCAAAAAAAAAAAAAAAGGAAGCACATTGTGCTTAAAAATTCATGCTCGGTCACTAGTTGATAGACAAGAAATCACCTTAAATGAAGAAGGAGAGGCCATTGGACCAAGTCAAAAGATAGTTTCTGAATTCAGCAATTTTTTGGGATCAGTAGCAAGGATGTCAGATTTATGTCCTCTTACTTACACAAATTGGAAGGCTATACCAAAGAAGAAGACTATATGGGCCTATGTCAATAAAAGATACATTGTTCCAGAAAAAGGACAGAAGGATGTATTTGCTATTATAAATGATGCTTGGAGGAGGTATAAATGGTTGATTAAGAAAAATCATTTTACTAAGTATAGAAACTTGCGTGAGCGGCTGAAAAACCGTCCAGACAGCATACCTGAAGCACACTTTAAGAAATTAATGACTTATTGGAGTTATGAAGCTATTCGAGAAATCAGTCATCAAAATGCTAAGAATATAGATAAACAAAAATGGAGACATCGAACGGGTCCCATAAGCTTTGCTGTCATAAGGGAAAGATTGCGTGCAACCAAGGATGATAGAGAGCCTCCAACTCAAGCTGAAGTTTTTATTGAAACACGACAAAGCAAGAGAGGAAAGCAGCTGGACCAAGTTACAAGTGATGCAATCACAACTCTTCAAGATTTGATCACAAATTCTGGTCATTCTTCGGTTGAAGCTTTTCAAACTGTCTTTGGAAAAGAAAAACCAGGGAGATTGCGCTGCTATGGAAGAGTTACAACATCTTCTCTGTTGAAAAGAAATAAAGTGGAAGCTATGGAAAAAAAGCATGCTGCTGAGGTGAAAAGTTTAACTGACAAGGTCCAAGAGATGGAGACTATACATAGAAAGGATATGGCTGCAATGGAAGAAAAATTGCAAGTTCTTCTAAGAGTCATGCTGAACCAAAGCAACACAGGCATAGATATGGGGGATTTAGGAGTTTTTTTATCAACCCGAAATGATGACAATAATGTTCGACATTCATCTACATCTAATCATGAGTCAGTCATGAAGCTCACAGTGAAGACTCTGAAAGGAAGCCATTTCAAAATCAGAGTTCATCCTTCTGATTCTATAATGGCTGTAAAAACGAATATTGAAGACATTCAAGGAAAAGATAATTACCCATGCAGACAACAATTGCTAATTCACAATGGAAAAGTTTTGAAAGATGAAACTAGTTTAGCTGATAATGAAGTCTCTGAAGATGACTTTCTTGTTGTCATGCTCAATAAGGTAAATAATAGATCTATGGGTAGTGAATGTGTTGTTGATAACTACGAAGAAGAGGAAATCAGACGAAGAGGATGA 1890 0.3725 MMNGLRNKVSAEHKTDLVNHRPSKKQKITPKLDDSMMNGLSNKVYAQIKKELVDHGPSKKQKNTLKLDGSMMNGLRNKVSAEHKMDLVNHRPSKKQKITPKLDQSMFDGLSNNFSAQVQKDLGDDGPSKKQKSTPKIPSMSLDEYFKRSREQLEAEESENEELDREQEVEGEINYENGDGDNSMEGNSIKKKKKGSTLCLKIHARSLVDRQEITLNEEGEAIGPSQKIVSEFSNFLGSVARMSDLCPLTYTNWKAIPKKKTIWAYVNKRYIVPEKGQKDVFAIINDAWRRYKWLIKKNHFTKYRNLRERLKNRPDSIPEAHFKKLMTYWSYEAIREISHQNAKNIDKQKWRHRTGPISFAVIRERLRATKDDREPPTQAEVFIETRQSKRGKQLDQVTSDAITTLQDLITNSGHSSVEAFQTVFGKEKPGRLRCYGRVTTSSLLKRNKVEAMEKKHAAEVKSLTDKVQEMETIHRKDMAAMEEKLQVLLRVMLNQSNTGIDMGDLGVFLSTRNDDNNVRHSSTSNHESVMKLTVKTLKGSHFKIRVHPSDSIMAVKTNIEDIQGKDNYPCRQQLLIHNGKVLKDETSLADNEVSEDDFLVVMLNKVNNRSMGSECVVDNYEEEEIRRRG* 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g1605 629 MobiDBLite consensus disorder prediction 117 190 - -
Mtr8g1605 629 Coils Coil 146 166 - -
Mtr8g1605 629 SUPERFAMILY Ubiquitin-like 504 609 IPR029071 -
Mtr8g1605 629 MobiDBLite consensus disorder prediction 156 175 - -
Mtr8g1605 629 Gene3D - 524 606 - -
Mtr8g1605 629 MobiDBLite consensus disorder prediction 9 31 - -
Mtr8g1605 629 Pfam Ubiquitin family 532 605 IPR000626 GO:0005515
Mtr8g1605 629 PANTHER OS10G0409366 PROTEIN-RELATED 86 504 - -
Mtr8g1605 629 CDD Ubl_Rad23 530 603 - -
Mtr8g1605 629 SMART ubq_7 530 604 IPR000626 GO:0005515
Mtr8g1605 629 MobiDBLite consensus disorder prediction 1 36 - -
Mtr8g1605 629 ProSiteProfiles Ubiquitin domain profile. 530 608 IPR000626 GO:0005515
Mtr8g1605 629 PANTHER TRANSPOSASE, PTTA/EN/SPM, PLANT-RELATED 86 504 - -
Mtr8g1605 629 Pfam Plant transposase (Ptta/En/Spm family) 320 441 IPR004252 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g1605 Mtr-Chr8 23270304 23275205 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g1605 530 603 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 39.189 2.09e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g1605 - - ccaj:109792841 441.81