Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g1598 ATGTATGAGATAATCCTAACCAGTTCACCAGAAGGTCCCATGATAGCATTTGATGCTTCCACCGGTGCCACGGTTGCGCTGTTCACTGGTAGCCGGTCACCATGTCGCGGTCTCATGGTGACAAGCCAAGGATTCATTGCAGCTTCCCATGTGTCCTCGAACACAGGGACGGGCTCGATCCATATTTACAATTGGCACACTCCAACGGTCTTCCAAAACATCCCTCTCCCCGAACCTGTGGCTCCACTAGCCGCCACCTTGGATGGTGACTTTCTCTTTGCAGGTGGCGTGTCGGGGAGTATCCACTCCTTGTCACTCCCTTCCGGAGATATCATCAAAACATGCACTCCTTACTCGAAACCTGTTTCGAGTCTCCATCTTAGTGATGATGGGTCACTATTGATTTCAGGTAACAATGATGGCACTATTGTTGTGATCCCATCATTTAAGCTTGTTGATGATTCCTCTACTTGTAGTGACCCAATCTTACACAAATGGAAGGCTCATTCTGATTCAGTGACATGTTTCAACTCTGGAATTTGCATTCATACTTGTACATTTGTTTCTTGTTCCATGGACTGCACGTGTAAGTTTTGGAGTTTATCGAATGGGATAACTCTAATGCGAACCGTGACATTTCCATGTGCCATTTTTGGGCTTGTTATGGATTCAACAGAGTCAGGTTTCTATGCTGGTGGTTCAGATGGGTTTGTTTATAAAGGGTTAATGAAAGTTGGGAATAGAAAAATGTTAGAAAAAGGAAAAGCGTATGAATTGGTTAATTTGGGTAACAAAACAAAAAGCCATGATGGGTCAATTATGTCTTTGGTTTTGGTGAATGAAGGGAGGAATTTGGTGTCTGCTTCAGAAGATGGGAGTGTTTGGATGTGGGATGTTGAGAAAGGTGAAGTCATTATGGTTTTGGGGAATGATCAAATATTAGGAAGAAGATCAACAAGAAGCATTGGTGATATGATAGTGGTCAAAGGGAGTAATGTTACAAAGGGAAATGCTAGTAGTAAAGGGGGTGCTATAAGTGGTTTTAGTTCTTCTGGATTATCTGATGAAGAGGTGATTAAGACTTTGATGAAAATCACAGAGCTTGGAAATGTGATGGATGTGGCAGTTCATGACAAGAGAAGAGCCATTGATATGCTTGAATCTGCTATTGCAATGTATGAGAGGCTATTGAGGCTTATTCTTAAGGAAGTCACCAAAGCAATTGAAGAGGCAGATCATGAGGATGAAGACTTGGATAACAAAGGGAAAAAAGATGAGAATTAA 1284 0.4221 MYEIILTSSPEGPMIAFDASTGATVALFTGSRSPCRGLMVTSQGFIAASHVSSNTGTGSIHIYNWHTPTVFQNIPLPEPVAPLAATLDGDFLFAGGVSGSIHSLSLPSGDIIKTCTPYSKPVSSLHLSDDGSLLISGNNDGTIVVIPSFKLVDDSSTCSDPILHKWKAHSDSVTCFNSGICIHTCTFVSCSMDCTCKFWSLSNGITLMRTVTFPCAIFGLVMDSTESGFYAGGSDGFVYKGLMKVGNRKMLEKGKAYELVNLGNKTKSHDGSIMSLVLVNEGRNLVSASEDGSVWMWDVEKGEVIMVLGNDQILGRRSTRSIGDMIVVKGSNVTKGNASSKGGAISGFSSSGLSDEEVIKTLMKITELGNVMDVAVHDKRRAIDMLESAIAMYERLLRLILKEVTKAIEEADHEDEDLDNKGKKDEN* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g1598 427 PANTHER WD-REPEAT PROTEIN 18 2 415 IPR045227 -
Mtr8g1598 427 Gene3D - 155 318 IPR015943 GO:0005515
Mtr8g1598 427 ProSitePatterns Trp-Asp (WD) repeats signature. 285 299 IPR019775 -
Mtr8g1598 427 Coils Coil 401 421 - -
Mtr8g1598 427 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 4 303 IPR011047 -
Mtr8g1598 427 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 266 303 - -
Mtr8g1598 427 Gene3D - 2 154 IPR015943 GO:0005515
Mtr8g1598 427 PANTHER OS09G0477800 PROTEIN 2 415 - -
Mtr8g1598 427 Pfam WD domain, G-beta repeat 163 200 IPR001680 GO:0005515
Mtr8g1598 427 Pfam WD domain, G-beta repeat 113 145 IPR001680 GO:0005515
Mtr8g1598 427 Pfam WD domain, G-beta repeat 267 298 IPR001680 GO:0005515
Mtr8g1598 427 ProSiteProfiles Trp-Asp (WD) repeats profile. 266 307 IPR001680 GO:0005515
Mtr8g1598 427 SMART WD40_4 159 200 IPR001680 GO:0005515
Mtr8g1598 427 SMART WD40_4 108 147 IPR001680 GO:0005515
Mtr8g1598 427 SMART WD40_4 21 64 IPR001680 GO:0005515
Mtr8g1598 427 SMART WD40_4 259 298 IPR001680 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g1598 90 301 U-box Gene Family AT1G04510 27.315 2.01e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g1598 K14829 - gmx:100785191 444.506
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g1598 8 23122605 23124093 Mtr8g1598 8 23122605 23124093 ECH