Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g1583 ATGTCAGAGGGGGTAATCCAACAAGAAGGTCCATATCAGCAGCTATTGGCCACAAGCAAAGAATTCCAAGACCTTGTCAATGCTCACAAGGTTACTGATGGTTCAAACCAGCTTGTAAATGTTACTTTTTCTCGAGCTTCTATAAAGATTACACAGACTTTAGTAGAAAATAAGGGTAAAGAAGCAAATGGTAATCAATTAATTAAGCAAGAAGAAAGAGAGAAAGGAGACAAAGGGTTGAAGCCTTACTTACAATATCTGAATCAGATGAAAGGCTATATATTCTTCTTTGTGGCTTCACTTGGTCACTTTATTTTTTTGGTATGCCAGATATTGCAAAACTTGTGGATGGCAGCAAATGTAGACAATCCTCGTGTCAGCACGTTCCAGTTGATTTTTGTTTACTTCCTACTTGGAGCTTCTTCGGCATTTTTCATGTTGACTAGAAGTCTATTTGTAATTGCTTTAGGTCTTCAATCCTCAAAATATTTATTTTTACAGTTGATGAACTCCCTTTTTCGTGCACCGATGCCTTTTTATGACTGTACACCATTGGGAAGGATACTAAGTAGGGTTTCATCTGAACTGAGCATTATGGATCTTGATATCCCATTTAGCCTCACTTTTGCGGTCGGAACCACTATGAATTTTTATTCTACTCTTACAGTTTTCTCAGTTGTCACTTGGCAAGTATTGATTGTCGCTATACCAATGGTTTATATTACGATTCGCTTGCAGAGATACTACTTTGCCTCAGCAAAAGAAGTGATGCGGATAACTGGCACAACAAAATCCTATGTAGCAAATCATGTAGCTGAAACTGTTTCTGGAGCAGTGACAATAAGAACTTTTGAGGAGGAAGATCGTTTCTTTCAGAAGAATCTTGATCTAATTGACATTAATGCTAGTTCATTTTTTCATAATTTTGCCTCAAACGAGTGGTTGATCCAACGGTTAGAAACAATAAGTGCAGGTGTTCTTGCCTCTGCAGCACTTTGCATGGTTATACTTCCACCAGGGACTTTCACCTCTGGTTTTATTGGCATGGCTCTATCTTATGGTCTTGCACTAAATTCTTTCTTAGTGAATTCAATTCAAAGTCAGTGCACTCTTGCAAATCAAATAATATCAGTCGAGAGGCTAAATCAATATATGCATATACAAAGTGAGGCCAAAGAAATCGTAGAAGGAAATCGCCCTCCTTTGAATTGGCCAATTGCAGGCAAAGTAGAAATAAATGACTTGAAGATACGATACAGGCCTGACGGACCACTTGTACTTCATGGGATCACATGCACATTCGAAGTAGGTCACAAGATTGGTATTGTCGGAAGAACAGGCAGCGGAAAATCCACTCTTATTAGTGCTTTATTTCGTCTTGTGGAACCATCAGGAGGAAACATTATAATTGATGGCGTTGACATCTCATCTATTGGCCTTCATGATTTGAGGTCGCGTTTTGGCATTATACCTCAAGATCCTACGCTTTTTACCGGGACAGTCAGATATAACTTGGATCCTTTATCTCAATACAGTGACCAAGAGATATGGGAGGTTCTTGGAAAGTGTCAATTGCGAGAAGTTGTCCAAGAGAAAGACGAGGGCTTAAACTCCTCAGTTGTTGAGGATGGATCAAATTGGAGCATGGGACAAAGGCAATTATTCTGTTTGGGGCGTGCGCTTTTAAGGAGAAGTAGAATATTGGTACTTGATGAAGCAACTGCATCAGTCGATAATTCAACTGATTATATTCTGCTGAAAACCATTAGAACCGAGTTTGCAGATTGTACAGTAATCACAGTAGCGCACAGAATTCCAACTGTGATGGATTGCACTATGGTTCTTTCAATCAATGATGGAAAACTAGTGGAGTATGACGAGCCAACGAACTTGATGAAGAGAGAAGAATCGTTGTTCAGGAAACTTGTCAAGGAATACTGGTCTTATTTTCAGTCTGCAGAGTCACATTGA 1971 0.3922 MSEGVIQQEGPYQQLLATSKEFQDLVNAHKVTDGSNQLVNVTFSRASIKITQTLVENKGKEANGNQLIKQEEREKGDKGLKPYLQYLNQMKGYIFFFVASLGHFIFLVCQILQNLWMAANVDNPRVSTFQLIFVYFLLGASSAFFMLTRSLFVIALGLQSSKYLFLQLMNSLFRAPMPFYDCTPLGRILSRVSSELSIMDLDIPFSLTFAVGTTMNFYSTLTVFSVVTWQVLIVAIPMVYITIRLQRYYFASAKEVMRITGTTKSYVANHVAETVSGAVTIRTFEEEDRFFQKNLDLIDINASSFFHNFASNEWLIQRLETISAGVLASAALCMVILPPGTFTSGFIGMALSYGLALNSFLVNSIQSQCTLANQIISVERLNQYMHIQSEAKEIVEGNRPPLNWPIAGKVEINDLKIRYRPDGPLVLHGITCTFEVGHKIGIVGRTGSGKSTLISALFRLVEPSGGNIIIDGVDISSIGLHDLRSRFGIIPQDPTLFTGTVRYNLDPLSQYSDQEIWEVLGKCQLREVVQEKDEGLNSSVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASVDNSTDYILLKTIRTEFADCTVITVAHRIPTVMDCTMVLSINDGKLVEYDEPTNLMKREESLFRKLVKEYWSYFQSAESH* 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g1583 656 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 97 373 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mtr8g1583 656 PANTHER ABC TRANSPORTER C FAMILY PROTEIN 1 656 - -
Mtr8g1583 656 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 1 656 - -
Mtr8g1583 656 SUPERFAMILY ABC transporter transmembrane region 83 390 IPR036640 GO:0005524|GO:0016021
Mtr8g1583 656 Pfam ABC transporter transmembrane region 94 336 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mtr8g1583 656 Pfam ABC transporter 427 575 IPR003439 GO:0005524
Mtr8g1583 656 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 410 644 IPR003439 GO:0005524
Mtr8g1583 656 CDD ABC_6TM_ABCC_D2 92 385 IPR044726 GO:0140359
Mtr8g1583 656 Gene3D ABC transporter type 1, transmembrane domain 58 392 IPR036640 GO:0005524|GO:0016021
Mtr8g1583 656 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 400 643 IPR027417 -
Mtr8g1583 656 SMART AAA_5 436 619 IPR003593 -
Mtr8g1583 656 CDD ABCC_MRP_domain2 408 628 - -
Mtr8g1583 656 Gene3D - 393 645 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g1583 Mtr-Chr8 22608745 22612038 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g1583 406 656 Calmodulin-binding Proteins AT2G36910 29.020 2.57e-29 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g1583 K05666 - mtr:MTR_8g042520 1280.77