Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mtr8g1582 | ATGGATTTCACCAAAAACATCACCGACCTACCACCCAACAAACGACTAAGATTCATTTATCAGCAGCAACAACAACAGGAAGAACAGGATCTTAGTCATTGTTCACTCTTACCCACCAAAAAACGCAAAGAATCTCGTAACTCATCACTTTTTCACACCCCACCTTCATCACCAACACCCCCACCATCTACTTATTCTCTACCCACCAAAAAAAGAATAACCGCCCTTCAACCCCACCTTCACCACCACAATAACATCCCAAACGATGCTGTTCCGCTCATCGATCTCAACGTCGAATACAGTCCTTCTCTCCCATCAGCCACCCCAATCGAAAAACAATCTCAAAAACAGGACATTGAATTTGAAGTCGATGATGATGAAATTTTATGCTGTGTGTGCCATAGCACAGACGCTAATGCTGAGGATCCAATCGTTTTCTGCGACGGTTGTAACTTAATGGTCCATGCTTCCTGCTATGGTAACCCTCTGGTGAAACAGATCCCAGATGGTGACTGGTTTTGCGATCAGTGTCGTTTTAAAAACGACATTGATACTGACACCGGTCCAATTCGTTGCTCCCTCTGTCCTACGAAAGAGGGAGCAATGAAACAAACAACAGATGGAAAGTGGGTCCATCTGGTTTGTGCTTTACTTGTGCCTGAAGTGTTTTTTGTGGATCCAGAAGGGAGAGAAGGGATTGATTGTTCTAAAATTCCAAAGAAGAGGTGGTTGGAGAAGTGTTATGTATGTGGGTGCTTTGATGGATGTGCTTTGGTTTGCTCTGAACAGAAGTGTGGTTTGGGTTTTCATATTACCTGTGGAATCAAAGAGGATCTTTGTATTGAGTATAAGGAAGGGAAGAAAGGTGCTACTGTTGTTGCTGGTTTCTGTAAAACCCACTCTCAGATCTGGGAAAAGAACAAGGGATCTGGGAAATACAAAATTGTTGCAGTTGAAGATAAAGAGTAG | 969 | 0.4303 | MDFTKNITDLPPNKRLRFIYQQQQQQEEQDLSHCSLLPTKKRKESRNSSLFHTPPSSPTPPPSTYSLPTKKRITALQPHLHHHNNIPNDAVPLIDLNVEYSPSLPSATPIEKQSQKQDIEFEVDDDEILCCVCHSTDANAEDPIVFCDGCNLMVHASCYGNPLVKQIPDGDWFCDQCRFKNDIDTDTGPIRCSLCPTKEGAMKQTTDGKWVHLVCALLVPEVFFVDPEGREGIDCSKIPKKRWLEKCYVCGCFDGCALVCSEQKCGLGFHITCGIKEDLCIEYKEGKKGATVVAGFCKTHSQIWEKNKGSGKYKIVAVEDKE* | 323 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mtr8g1582 | 322 | SMART | PHD_3 | 246 | 301 | IPR001965 | - | |
| Mtr8g1582 | 322 | SMART | PHD_3 | 129 | 178 | IPR001965 | - | |
| Mtr8g1582 | 322 | PANTHER | PHD FINGER PROTEINS | 6 | 114 | - | - | |
| Mtr8g1582 | 322 | PANTHER | PHD FINGER PROTEINS | 114 | 308 | - | - | |
| Mtr8g1582 | 322 | ProSiteProfiles | Extended PHD (ePHD) domain profile. | 189 | 301 | IPR034732 | - | |
| Mtr8g1582 | 322 | SUPERFAMILY | FYVE/PHD zinc finger | 118 | 183 | IPR011011 | - | |
| Mtr8g1582 | 322 | CDD | PHD_BRPF_JADE_like | 129 | 177 | - | - | |
| Mtr8g1582 | 322 | Pfam | PHD-finger | 142 | 178 | - | - | |
| Mtr8g1582 | 322 | PANTHER | RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN | 114 | 308 | - | - | |
| Mtr8g1582 | 322 | PANTHER | RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN | 6 | 114 | - | - | |
| Mtr8g1582 | 322 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 190 | 303 | IPR013083 | - | |
| Mtr8g1582 | 322 | Pfam | PHD-zinc-finger like domain | 191 | 300 | - | - | |
| Mtr8g1582 | 322 | MobiDBLite | consensus disorder prediction | 27 | 68 | - | - | |
| Mtr8g1582 | 322 | MobiDBLite | consensus disorder prediction | 34 | 48 | - | - | |
| Mtr8g1582 | 322 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 107 | 189 | IPR013083 | - | |
| Mtr8g1582 | 322 | ProSiteProfiles | Zinc finger PHD-type profile. | 127 | 180 | IPR019787 | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Mtr8g1582 | 22 | 320 | C2H2 Transcription Factor Family | AT3G14740 | 47.077 | 5.39e-96 | 286 |
Transcription factors information