Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g1558 ATGCTGAGAAATCTCCAAGAACACGATTCAAATTACTCTGATTCTCTGTTTGTTCGCATCATAGCATGCGAATTATGCTGCAGTACTTGTAATCCAAGGCGCAAGAAAAACATCAATGAAGGGAAACCGTTTGAAGATATGGAGTTTCTTGAGAAGCTTGGTGAAGGTGGTTTTGGTACAGTTTTCCGTTGCTGCGACGTCGAAACTAAACAAATCGTGGCTGTTAAGCAAATCTCTATTCTTGACACTTATAATGCTGTTCCTGGTTCCATCATCAGAGAAGTCTCGTTTCTTAGAGAATTGAATCATCCTAACATTGTTAGGTTGTTGAAGGTAAGGTACAAGAAGGGAACAAGACTCGTGCACTTGGTTTTAGAGTATCTTGATTGTGATCTTCATGATTACATTATTGACGCAGAACGCTTCAATTCATCTATTAACAATCCAATGACTAAAAAGAGTTTTCTGTATCAGATACTATCTGCGGTGGAGTACTGTCATTCTCGGAAGATTATTCATAGAGATTTGAAACCGAGTAACCTTTTAATTGATCATTCTAAAGAGATAATCAAGTTGGCTGATTTTGGCTTGGCTAGAGAGTTGGGAGATCCTGACGTGTTATATTCGCCGAAGGTAGCAACTCGGTTTTATAGGGCACCTGAGTTATTGTTTGAATGTGGCCAATATTCAACTCCAATTGATATTTGGTCTGTGGGCTGTATTTTTGGTGAGATGGTACTTGGACTACCAATTCTCCGAGCAATTGATTGCAAGGATGAACTAGAGACGATTTTCAGAATGTTCGGCACCCCAACAGAGGAAACATGGCCAGGGGTCACTACTTTATGTGCTAACCTTCAAACCTATCCCAAATTTAGACCAATGGACCTGTCATCAATTTTTCCTCCTTTTGATCCAACTGGTCTTAATCTTCTAATGAGGATGCTTTGCTTGGACCCAAACAAGAGGATTTCTGCCGAAGCTGCTCTTAGACATGCTTACTTTGATGACTTGGATCCGGTTATTAAAGGAAGATCAAAGTCCTAA 1047 0.3992 MLRNLQEHDSNYSDSLFVRIIACELCCSTCNPRRKKNINEGKPFEDMEFLEKLGEGGFGTVFRCCDVETKQIVAVKQISILDTYNAVPGSIIREVSFLRELNHPNIVRLLKVRYKKGTRLVHLVLEYLDCDLHDYIIDAERFNSSINNPMTKKSFLYQILSAVEYCHSRKIIHRDLKPSNLLIDHSKEIIKLADFGLARELGDPDVLYSPKVATRFYRAPELLFECGQYSTPIDIWSVGCIFGEMVLGLPILRAIDCKDELETIFRMFGTPTEETWPGVTTLCANLQTYPKFRPMDLSSIFPPFDPTGLNLLMRMLCLDPNKRISAEAALRHAYFDDLDPVIKGRSKS* 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g1558 348 Gene3D Transferase(Phosphotransferase) domain 1 144 347 - -
Mtr8g1558 348 Gene3D Phosphorylase Kinase; domain 1 40 143 - -
Mtr8g1558 348 CDD STKc_CDK_like 48 335 - -
Mtr8g1558 348 PANTHER CYCLIN-DEPENDENT KINASE 24 341 - -
Mtr8g1558 348 SMART serkin_6 47 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr8g1558 348 ProSitePatterns Serine/Threonine protein kinases active-site signature. 171 183 IPR008271 GO:0004672|GO:0006468
Mtr8g1558 348 Pfam Protein kinase domain 48 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr8g1558 348 SUPERFAMILY Protein kinase-like (PK-like) 44 339 IPR011009 -
Mtr8g1558 348 ProSitePatterns Protein kinases ATP-binding region signature. 53 76 IPR017441 GO:0005524
Mtr8g1558 348 ProSiteProfiles Protein kinase domain profile. 47 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr8g1558 348 PANTHER CELL DIVISION PROTEIN KINASE 24 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g1558 Mtr-Chr8 21473006 21479145 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g1558 48 338 Core Cell Cycle Gene Families AT3G48750 46.048 9.28e-91 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-Pl Mtr8g1558 Pkinase 9.6e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g1558 K02206 - gmx:100799974 343.969