Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g1557 ATGACTTGCTTTCCTTTCTTATTTGGAAAGAAAGTGTCTTCTGATGTAAGACGAGATCCTGAAATCGATCAAGGACTTTCCGGCATTCGAATTAAAGTTTATACCTACAAAGAACTAAAAATTGCCTCTGACAATTTCAGCCCGGCTAATAAAATCGGGGAGGGTGGTTTTGGTTCTGTTTATAAGGGAGTGCTAAAAGGTGGGAAGTTAGCCGCCATAAAAGTCCTTTCGACTGAATCAAAACAGGGGGTGAAGGAATTCTTGACTGAGATTAATGTGATTTCGGAAATAAAGCATGAAAATTTGGTTATACTCTATGGTTGCTGTGTCGAAGGAGATCACAGAATATTAGTCTACAATTACCTCGAGAACAATAGCCTTTCACAAACCCTTCTAGCTGGAGGTCACAGTAATATCTACTTCGATTGGCAAACACGACGTAGGATATGCCTTGGAGTTGCACGTGGACTTGCCTTTCTCCATGAGGAAGTACTGCCACATATTGTTCACAGGGATATAAAAGCAAGCAATATTCTCCTCGACAAAGATCTTACACCTAAGATTTCAGATTTCGGTCTTGCAAAGCTGATTCCATCATACATGACTCATGTCAGCACACGTGTAGCAGGAACGATAGGTTATTTGGCACCGGAGTATGCAATAAGGGGGCAGTTGACACGTAAAGCAGATATTTACAGTTTTGGAGTACTCCTTGTTGAGATAGTCAGTGGGAGGTCTAACACAAATACAAGATTACCAATTGCAGATCAATATATTCTAGAAACGACATGGCAACTTTATGAGCGAAAGGAATTGGCACAATTGGTAGACATATCACTAAATGGCGAATTCGATGCTGAGGAGGCTTGTAAAATTCTGAAGATTGCCCTTCTTTGTACTCAGGATACACCTAAGCTCCGGCCAACCATGTCTTCTGTGGTCAAAATGCTCACCGGAGAAATGGATATCAATGAAACCAAGATAACAAAACCAGGCTTGATTTCAGATGTCATGGACCTTAAAATTAGAGAACCTAAAAAAAATATAAATATGGGGACAGCTCCATCTTCATACAATGCTTCCTCTAGCTCAGATAGCCAGGGTACTACTACCATTTCATTGGCTGCTTCAAGTTCTGCAACAACTTCAAGTTTTACTGTAAAATATGATTAA 1173 0.4015 MTCFPFLFGKKVSSDVRRDPEIDQGLSGIRIKVYTYKELKIASDNFSPANKIGEGGFGSVYKGVLKGGKLAAIKVLSTESKQGVKEFLTEINVISEIKHENLVILYGCCVEGDHRILVYNYLENNSLSQTLLAGGHSNIYFDWQTRRRICLGVARGLAFLHEEVLPHIVHRDIKASNILLDKDLTPKISDFGLAKLIPSYMTHVSTRVAGTIGYLAPEYAIRGQLTRKADIYSFGVLLVEIVSGRSNTNTRLPIADQYILETTWQLYERKELAQLVDISLNGEFDAEEACKILKIALLCTQDTPKLRPTMSSVVKMLTGEMDINETKITKPGLISDVMDLKIREPKKNINMGTAPSSYNASSSSDSQGTTTISLAASSSATTSSFTVKYD* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g1557 390 SMART serkin_6 46 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr8g1557 390 Gene3D Transferase(Phosphotransferase) domain 1 122 331 - -
Mtr8g1557 390 SUPERFAMILY Protein kinase-like (PK-like) 27 317 IPR011009 -
Mtr8g1557 390 ProSitePatterns Protein kinases ATP-binding region signature. 52 74 IPR017441 GO:0005524
Mtr8g1557 390 PANTHER - 2 373 - -
Mtr8g1557 390 Pfam Protein kinase domain 49 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr8g1557 390 Gene3D Phosphorylase Kinase; domain 1 17 121 - -
Mtr8g1557 390 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 2 373 - -
Mtr8g1557 390 ProSitePatterns Serine/Threonine protein kinases active-site signature. 168 180 IPR008271 GO:0004672|GO:0006468
Mtr8g1557 390 ProSiteProfiles Protein kinase domain profile. 46 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr8g1557 390 CDD STKc_IRAK 52 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g1557 Mtr-Chr8 21468148 21472072 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g1557 17 336 Receptor kinase-like Gene Family AT1G56120 53.560 8.20e-113 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Mtr8g1557 Pkinase 6.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g1557 - - gmx:100797706 594.349