Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g1556 ATGGCTTGTTCACCTTTTATATTTGGTAAGAAAGTGCCTTGTGGCAATTTTGAAGGGAATGGAATGAAAGTTTACACCTACAAAGAACTAAAAAAGGCCTCTAACAATTTCAACCTTGCTAATAAAATCAACCAGGGTGGTGTTGGTTCGGTCTATAAGGGAGTGCTAAAAGATGGGAGGTTAGCTGCTATAAAAGTTCTATCACTTGAATTCCGTCTGAATGCCGATAAATTCTTGCGCGAGATTAGTGTAATTTCTGAAATCCAGCATGAAAATTTAGTTGAACTATATGGCTGTTGTGTCGAAGGAGGTCACCGTATTTTGGTCTACGGTTACCTTGAGAACAGTAGCCTTGAACACACCCTTCTAGGTGAAGGTGTCAGCAATATCAAATTTAACTGGCAAGCACGGTGTAGGATATGTATCGGAGTTGCACGTGGACTTGAATTTCTACATGATCAAGAACAACCAAATAATGTTCACAGGGATATACGAGCAAGCAATATAGTCCTCGATGAAGACCTTAAACCGAAGATTTCAGATTTTGGTCTTGCAAACCTTATTCGACAAGATGTCACTCGTCTCATCTCATTATGTCCTATGGCACCAGAGGATGTGTTTATGGGGCCGCTGACACGTAAATCAGATGTTTACAGATTCGGAATCCTCCTGGTGGAGATAGTCAGTGGGAGATCTGATCGACGTATTCTAGAACAAACATGGAAACTTTATAACCGAAGGGAATTGGTCGAGTTGGTAGACACATCACTGGACTGGGGATGGTGCCTCGAGGAAGCTTGTAAATATCTGAAGATTTCCCTTCTGTGCACTCAGAGTTCGCCTAGGCTCCGACCAACCATGTCTTCTGTGCTCAAAATGCTCATTGGAGAAATGGATGTTGATGAAAGTAAGATAACAAGACCAGGCTTGGTATCAGATATTCCATAG 948 0.4177 MACSPFIFGKKVPCGNFEGNGMKVYTYKELKKASNNFNLANKINQGGVGSVYKGVLKDGRLAAIKVLSLEFRLNADKFLREISVISEIQHENLVELYGCCVEGGHRILVYGYLENSSLEHTLLGEGVSNIKFNWQARCRICIGVARGLEFLHDQEQPNNVHRDIRASNIVLDEDLKPKISDFGLANLIRQDVTRLISLCPMAPEDVFMGPLTRKSDVYRFGILLVEIVSGRSDRRILEQTWKLYNRRELVELVDTSLDWGWCLEEACKYLKISLLCTQSSPRLRPTMSSVLKMLIGEMDVDESKITRPGLVSDIP* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g1556 315 PIRSF ILK 11 253 - -
Mtr8g1556 315 PIRSF ILK 265 297 - -
Mtr8g1556 315 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 19 307 - -
Mtr8g1556 315 SMART tyrkin_6 37 294 IPR020635 GO:0004713|GO:0006468
Mtr8g1556 315 Gene3D Phosphorylase Kinase; domain 1 10 112 - -
Mtr8g1556 315 Pfam Protein tyrosine and serine/threonine kinase 38 294 IPR001245 GO:0004672|GO:0006468
Mtr8g1556 315 SUPERFAMILY Protein kinase-like (PK-like) 20 294 IPR011009 -
Mtr8g1556 315 ProSiteProfiles Protein kinase domain profile. 37 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr8g1556 315 Gene3D Transferase(Phosphotransferase) domain 1 113 307 - -
Mtr8g1556 315 PANTHER COLD-RESPONSIVE PROTEIN KINASE 1 19 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g1556 Mtr-Chr8 21462943 21464935 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g1556 24 313 Receptor kinase-like Gene Family AT1G56120 44.408 2.23e-80 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Mtr8g1556 PK_Tyr_Ser-Thr 9.4e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g1556 - - mtr:MTR_8g461250 637.106