Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g1548 ATGAGACAGTGTATTTTTGGTTCTTCACTTGGTATTATTCTTTGTGTCTTCATCTGTTTGCATAACTTTGCACAAGCTCAAACTGCAAACGCTACTACAGACCCTTCTGAAGCAAGAGTTGTACACTCGATCTTTAGCAAATGGGGAAAATCAGCAGACCAAACTCAATGGAACATAAGTGGCGAAATATGCAGTGGAAGAGCCATTGATAGCAGTACCACCATTGATGACACCACTTACAACCCATTCATCAAATGTGATTGTTCCTTCAACAACAAAACCACATGCCGCATCACTGCATTGAAAGTTTATGCATTGGATGTGATTAGTGAAATCCCACCAGAGCTATGGACTCTTACTTATCTCACCAATTTGAACCTTGGCCAAAATTACTTGACGGGGTCTCTACCTCCGGCAATTGGAAATCTGACTCGTATGCAATACATGTCCATTGGCATCAATGCTTTGTCAGGAGAGCTTCCAAAGGAACTGGGAGATCTTACACAGTTGATAGTATTGGGTTTTGGGTCCAATAACTTCTCTGGATCTTTGCCATCTGAACTTGGGAAGCTGGTAAAACTAGAACAACTCTACATGGATAGTTCTGGAATCAGTGGTCCCATTCCACCCACATTTGCAAGTCTTACGAATATGGTGACAGTATGGGCTTCAGACACAGAACTCACAGGCAGAATACCCGACTTCATAGGAAATTGGTCTAAGCTTCAATCCTTGAGGTTTCAGGGTAATTCATTTGAAGGTCCAATACCCTCATCATTATCCAATTTGACTTCTTTGACAGAGTTGAGAATAAGTGGTCTATCTAATAGGAGCTCATCATTGGAATTTGTAAGGAATATGAAGTCTATGACTATCTTAGAATTGAGGAATAACAATATTTCTGGTTCATTTCCTTCCACCATAGGAGAATTGCAAAATTTGACCCTGCTGGACTTGAGTTTCAACAACATCTCAGGACAAATTCCTGGATCAATTTTCAATTTGAGCTCGCTCTCTTCCTTGTTTCTTGGAAATAACACACTCAGTGGCAGTCTCCCTCAACAGAAAAGATCATCTCTTAACAACATCGACTTGTCATACAATGATCTATCAGGAAGCTTCCCCTCTTGGATAAACGAACAAAATTTACAATTGAACTTAGTAGCCAACAACTTGACAATAGAAAATTCAAATAGCAGTGGTTTGCCAACTGGGCTCAACTGTCTTCAGAAAAATTTTCCATGCAATCGTGGTGCTGGAAGATATTCTGACTTTGCGATCAAGTGTGGTGGTCCCCAAATTAGAACTACAGATGGAATTGTGTATGAAACGGACAATGAGACACTTGGTCCTGCTACTTACTTTGTTACTGACACAAATAGATGGGCTGTTAGTAATGTTGGAACATTTACCGGGATCAGCAATCCTCTGTTCAAAAGTTTTGTTTCGAATCAGTTCACTGGTACTGTGAACTCGGAGCTTTTTCAATTTGCTCGGCTATCTGCATCATCATTAAGATATTACGGTTTGGGATTGGAAAATGGTTTTTACAACATAACCCTCCAATTTGCGGAAACAGCTATTCTGGATTCTACTACATGGAAAAGCCTAGGTAGACGGGTCTTTGATATTTATATCCAGGGGACTCGTGTATTGAAGGATTTTGACATACAAAGAGAAGCTGGAGGTGTCTCCTACAGAGCTGTTCAAAAACAATTTAGGTTTGAAGTTAAAGAAAATTATGTCGAGGTCCATCTTTTTTGGGCGGGAAAAGGAACTTGTTGCATACCTGGCCAAGGTACTTATGGACCCTTGATTCAAGCCATCAGTGCTACCCCAGATTTCATACCTTCTGTCAGTAACAAACCTCCGAGCAGTAAAAAGAATAGAGCGGGTCTAATCATAGGAATCGTTGTTGGTGTTGGAGCTGTATGCTTTCTAGCAGTTTTTGCCATTTTCTATATCAACCGGAGAAGAAAACTCTACGATGATGATGAAGACCTTTTAGGCATTGATACAATGCCAAATACTTTCAGCTACTCTGAGTTGAAAAATGCTACAAGTGACTTCAATCGTGACAATAAACTTGGAGAGGGAGGTTTTGGACCTGTTTATAAGGGGATACTTAACGATGGAAGAGATGTGGCTGTGAAACAATTATCTATAGGATCCCATCAAGGAAAAAGTCAGTTCGTAGCTGAGATTGCTACTATATCTGCTGTGCAGCACCGTAATCTTGTCAAATTATACGGATGCTGTATTGAAGGGAGTAAAAGACTACTTGTCTACGAGTATTTAGAAAATAAGAGTCTTGATCAAGCATTGTTTGGAAATGTTTTATTCCTAAATTGGTCAACCCGCTATGATATATGTATGGGTGTTGCAAGAGGTTTGACATATTTACATGAGGAGTCGCGGCTCCGGATTGTACACCGTGATGTGAAGGCTAGTAATATTCTACTCGATTCTGAGCTTGTCCCAAAAATATCTGACTTTGGATTGGCTAAATTATATGATGATAAAAAAACCCATATAAGCACCCGTGTTGCTGGAACAATTGGATATCTTGCACCGGAGTATGCCATGCGCGGACACCTTACAGAGAAAGCAGATGTTTTTTCCTTTGGTGTCGTGGCTCTGGAGTTAGTTAGTGGGAGGCCGAATTCTGATTCAACTTTGGAAGGAGAGAAGATGTATCTTCTAGAATGGGCTTGGCAGCTTCATGAAAGAAACACTATAAATGAACTGATAGATCCTAGACTATCAGAATTCAACAAGGAAGAAGTCCAACGCCTTGTGGGAATAGCACTTTTGTGCACTCAGACATCACCAACTTTACGGCCATCAATGTCACGTGTAGTAGCAATGCTTTCAGGAGATATTGAAGTGGGCACTGTGACATCAAGGCCCGGATACTTGACTGACTGGAAATTTGACGACGTTAGCAGCATCATGACTGACGTTTCAGCGAAGGGACTAGATACAAGTAATTACAATTCAACGGCAAGTACAAGCATAGTTGGTGGTGCAGATATTCATTCACCAAATGATCCTTCTAAAGCCATCCTTCATGACACTCTTAGAGAGGGTAGGTAA 3096 0.4067 MRQCIFGSSLGIILCVFICLHNFAQAQTANATTDPSEARVVHSIFSKWGKSADQTQWNISGEICSGRAIDSSTTIDDTTYNPFIKCDCSFNNKTTCRITALKVYALDVISEIPPELWTLTYLTNLNLGQNYLTGSLPPAIGNLTRMQYMSIGINALSGELPKELGDLTQLIVLGFGSNNFSGSLPSELGKLVKLEQLYMDSSGISGPIPPTFASLTNMVTVWASDTELTGRIPDFIGNWSKLQSLRFQGNSFEGPIPSSLSNLTSLTELRISGLSNRSSSLEFVRNMKSMTILELRNNNISGSFPSTIGELQNLTLLDLSFNNISGQIPGSIFNLSSLSSLFLGNNTLSGSLPQQKRSSLNNIDLSYNDLSGSFPSWINEQNLQLNLVANNLTIENSNSSGLPTGLNCLQKNFPCNRGAGRYSDFAIKCGGPQIRTTDGIVYETDNETLGPATYFVTDTNRWAVSNVGTFTGISNPLFKSFVSNQFTGTVNSELFQFARLSASSLRYYGLGLENGFYNITLQFAETAILDSTTWKSLGRRVFDIYIQGTRVLKDFDIQREAGGVSYRAVQKQFRFEVKENYVEVHLFWAGKGTCCIPGQGTYGPLIQAISATPDFIPSVSNKPPSSKKNRAGLIIGIVVGVGAVCFLAVFAIFYINRRRKLYDDDEDLLGIDTMPNTFSYSELKNATSDFNRDNKLGEGGFGPVYKGILNDGRDVAVKQLSIGSHQGKSQFVAEIATISAVQHRNLVKLYGCCIEGSKRLLVYEYLENKSLDQALFGNVLFLNWSTRYDICMGVARGLTYLHEESRLRIVHRDVKASNILLDSELVPKISDFGLAKLYDDKKTHISTRVAGTIGYLAPEYAMRGHLTEKADVFSFGVVALELVSGRPNSDSTLEGEKMYLLEWAWQLHERNTINELIDPRLSEFNKEEVQRLVGIALLCTQTSPTLRPSMSRVVAMLSGDIEVGTVTSRPGYLTDWKFDDVSSIMTDVSAKGLDTSNYNSTASTSIVGGADIHSPNDPSKAILHDTLREGR* 1032
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g1548 1031 Gene3D Ribonuclease Inhibitor 279 401 IPR032675 -
Mtr8g1548 1031 SMART serkin_6 690 957 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr8g1548 1031 Gene3D - 424 613 - -
Mtr8g1548 1031 SUPERFAMILY Protein kinase-like (PK-like) 673 972 IPR011009 -
Mtr8g1548 1031 Pfam Leucine rich repeat 289 348 IPR001611 GO:0005515
Mtr8g1548 1031 Gene3D Transferase(Phosphotransferase) domain 1 766 965 - -
Mtr8g1548 1031 Pfam Protein tyrosine and serine/threonine kinase 693 957 IPR001245 GO:0004672|GO:0006468
Mtr8g1548 1031 ProSitePatterns Serine/Threonine protein kinases active-site signature. 809 821 IPR008271 GO:0004672|GO:0006468
Mtr8g1548 1031 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 136 1009 - -
Mtr8g1548 1031 Pfam Malectin domain 424 609 IPR021720 -
Mtr8g1548 1031 Gene3D Phosphorylase Kinase; domain 1 663 765 - -
Mtr8g1548 1031 Gene3D Ribonuclease Inhibitor 34 278 IPR032675 -
Mtr8g1548 1031 ProSiteProfiles Leucine-rich repeat profile. 313 335 IPR001611 GO:0005515
Mtr8g1548 1031 ProSiteProfiles Protein kinase domain profile. 690 963 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr8g1548 1031 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 136 1009 - -
Mtr8g1548 1031 SUPERFAMILY L domain-like 103 395 - -
Mtr8g1548 1031 CDD STKc_IRAK 696 957 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g1548 Mtr-Chr8 21356653 21370055 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g1548 103 277 Receptor kinase-like Gene Family AT1G56120 25.414 2.72e-09 59.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Mtr8g1548 PK_Tyr_Ser-Thr 5.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g1548 - - mtr:MTR_8g445800 1700.26